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Rod-shaped bacteria, such as Escherichia coli, commonly live forming mounded colonies. They initially grow two-dimensionally on a surface and finally achieve three-dimensional growth. While it was recently reported that three-dimensional…

Soft Condensed Matter · Physics 2022-12-23 Takuro Shimaya , Kazumasa A. Takeuchi

Constructing systems that exhibit time-scales much longer than those of the underlying components, as well as emergent dynamical and collective behavior, is a key goal in fields such as synthetic biology and materials self-assembly.…

Statistical Mechanics · Physics 2021-07-22 Evelyn Tang , Jaime Agudo-Canalejo , Ramin Golestanian

When considering flows in biological membranes, they are usually treated as flat, though more often than not, they are curved surfaces, even extremely curved, as in the case of the endoplasmic reticulum. Here, we study the topological…

Fluid Dynamics · Physics 2021-05-27 Rickmoy Samanta , Naomi Oppenheimer

We provide a comprehensive quantitative analysis of localized and extended topological defects in the steady state of 2D passive and active repulsive Brownian disk systems. We show that, both in and out-of-equilibrium, the passage from the…

Topological defects are a ubiquitous phenomenon in diverse physical systems. In nematic liquid crystals (LCs), they are dynamic, physicochemically distinct, sensitive to stimuli, and are thereby promising for a range of applications.…

Soft Condensed Matter · Physics 2023-12-25 Shengzhu Yi , Hao Chen , Xinyu Wang , Miao Jiang , Bo Li , Qi-huo Wei , Rui Zhang

Topological acoustic and elastic waves have recently emerged as an exciting interdisciplinary field which is still mainly focused on low-dimensional structures and model systems. Here we demonstrate numerically an elastic-wave analogue of…

Mesoscale and Nanoscale Physics · Physics 2018-05-23 Zhan Xiong , Hai-Xiao Wang , Jinjie Shi , Jie Luo , Yun Lai , Ming-Hui Lu , Jian-Hua Jiang

Achieving control and tunability of lyotropic materials has been a long-standing goal of liquid crystal research. Here we show that the elasticity of a liquid crystal system consisting of a dense suspension of semiflexible biopolymers can…

Soft Condensed Matter · Physics 2018-01-12 Rui Zhang , Nitin Kumar , Jennifer Ross , Margaret L. Gardel , Juan J. de Pablo

Specific features of two-dimensional nematodynamics give rise to shortfalls of the tensor representation of the nematic order parameter commonly used in computations, especially in theory of active matter. The alternative representation in…

Soft Condensed Matter · Physics 2022-09-21 L. M. Pismen

Active systems, from bacterial suspensions to cellular monolayers, are continuously driven out of equilibrium by local injection of energy from their constituent elements and exhibit turbulent-like and chaotic patterns. Here we demonstrate…

Soft Condensed Matter · Physics 2016-02-04 Amin Doostmohammadi , Michael F. Adamer , Sumesh P. Thampi , Julia M. Yeomans

We study emergent dynamics in a viscous drop subject to interfacial nematic activity. Using hydrodynamic simulations, we show how the interplay of nematodynamics, activity-driven flows and surface deformations gives rise to a sequence of…

Soft Condensed Matter · Physics 2024-04-19 Mohammadhossein Firouznia , David Saintillan

Drops of active liquid crystal have recently shown the ability to self-propel, which was associated with topological defects in the orientation of active filaments [Sanchez {\em et al.}, Nature {\bf 491}, 431 (2013)]. Here, we study the…

Soft Condensed Matter · Physics 2016-07-05 Diana Khoromskaia , Gareth P. Alexander

Abundant in nature, colloids also find increasingly important applications in science and technology, ranging from direct probing of kinetics in crystals and glasses to fabrication of third-generation quantum-dot solar cells. Because…

We report numerical results for the hydrodynamics of inhomogeneous lyotropic and extensile active nematic gels. By simulating the coupled Cahn-Hilliard, Navier-Stokes, and Beris-Edwards equation for the evolution of the composition, flow…

Soft Condensed Matter · Physics 2023-01-06 Renato Assante , Dom Corbett , Davide Marenduzzo , Alexander Morozov

We use numerical simulations to investigate the hydrodynamic behavior of the interface between nematic (N) and isotropic (I) phases of a confined active liquid crystal. At low activities, a stable interface with constant shape and velocity…

Soft Condensed Matter · Physics 2021-02-25 Rodrigo C. V. Coelho , Nuno A. M. Araújo , Margarida M. Telo da Gama

Liquid crystals have attracted enormous interest because of the variety of their phases and richness of their application. The interplay of general physical symmetries and specific molecular features generates a myriad of different…

Statistical Mechanics · Physics 2011-09-06 Marco G. Mazza , Martin Schoen

Active living matter continuously creates and annihilates topological defects in a process that remains poorly understood. Here, we investigate these dynamics in two distinct active living systems: swarming bacteria and human bronchial…

Epithelial monolayers are a central building block of complex organisms. Topological defects have emerged as important elements for single cell behavior in flat epithelia. Here we theoretically study such defects in a three-dimensional…

Biological Physics · Physics 2025-02-19 Oliver M. Drozdowski , Ulrich S. Schwarz

Field theories predict that phase transitions sequentially breaking continuous and discrete symmetries can generate hybrid topological structures in which defects of different dimensionalities merge. We report experimental and numerical…

Soft Condensed Matter · Physics 2025-12-09 Shengzhu Yi , Chao Zhou , Zening Hong , Zhongjie Ma , Mingjun Huang , Satoshi Aya , Rui Zhang , Qi-Huo Wei

The emergence of long-range spatiotemporal order from intrinsic chaos is a central challenge in far-from-equilibrium physics. In active fluids, such as cytoskeletal networks driving cellular motion, self-generated flows typically produce…

Dense active matter, from bacterial suspensions and microtubule bundles driven by motor proteins to cellular monolayers and synthetic Janus particles, is characterised by mesoscale turbulence, the emergence of chaotic flow structures. By…

Soft Condensed Matter · Physics 2016-06-22 Sumesh P. Thampi , Amin Doostmohammadi , Tyler N. Shendruk , Ramin Golestanian , Julia M. Yeomans
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