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Accurately determining and classifying the structure of complex networks is the focus of much current research. One class of network of particular interest are metabolic pathways, which have previously been studied from a graph theoretical…

Mathematical Physics · Physics 2012-10-10 Henry Dorrian , Kieran Smallbone , Jon borresen

Recently bipartite graphs have been widely used to represent the relationship two sets of items for information retrieval applications. The Web offers a wide range of data which can be represented by bipartite graphs, such us movies and…

Information Retrieval · Computer Science 2015-07-21 Antonia Korba

The significance of the PageRank algorithm in shaping the modern Internet cannot be overstated, and its Complex Network theory foundations continue to be a subject of research. In this article we carry out a systematic study of the…

Physics and Society · Physics 2023-10-11 Gonzalo Contreras-Aso , Regino Criado , Miguel Romance

Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes…

Physics and Society · Physics 2020-04-28 Zongning Wu , Zengru Di , Ying Fan

We reveal a hierarchical, multilayer organization of finite components -- i.e., tendrils and tubes -- around the giant connected components in directed networks and propose efficient algorithms allowing one to uncover the entire…

Disordered Systems and Neural Networks · Physics 2017-02-22 G. Timár , A. V. Goltsev , S. N. Dorogovtsev , J. F. F. Mendes

Higher-order networks are efficient representations of sequential data. Unlike the classic first-order network approach, they capture indirect dependencies between items composing the input sequences by the use of \textit{memory-nodes}. We…

Physics and Society · Physics 2021-09-08 Célestin Coquidé , Julie Queiros , François Queyroi

Neural networks are often represented as graphs of connections between neurons. However, despite their wide use, there is currently little understanding of the relationship between the graph structure of the neural network and its…

Machine Learning · Computer Science 2020-08-28 Jiaxuan You , Jure Leskovec , Kaiming He , Saining Xie

In this paper, we propose a new homological method to study weighted directed networks. Our model of such networks is a directed graph $Q$ equipped with a weight function $w$ on the set $Q_{1}$ of arrows in $Q$. We require that the range…

Machine Learning · Computer Science 2020-09-29 Manohar Kaul , Dai Tamaki

Link prediction is a classical problem in graph analysis with many practical applications. For directed graphs, recently developed deep learning approaches typically analyze node similarities through contrastive learning and aggregate…

Machine Learning · Computer Science 2025-06-26 Yuyang Zhang , Xu Shen , Yu Xie , Ka-Chun Wong , Weidun Xie , Chengbin Peng

This paper focuses on the link scheduling problem in networks where signal delays between nodes are multiples of a time interval. To model such networks, a directed hypergraph is employed, along with an integer matrix that specifies the…

Information Theory · Computer Science 2024-10-28 Shenghao Yang , Jun Ma , Yanxiao Liu

The PageRank algorithm employed at Google assigns a measure of importance to each web page for rankings in search results. In our recent papers, we have proposed a distributed randomized approach for this algorithm, where web pages are…

Systems and Control · Computer Science 2016-11-15 Hideaki Ishii , Roberto Tempo , Er-Wei Bai

PageRank, the prestige measure for Web pages used by Google, is the stationary probability of a peculiar random walk on directed graphs, which interpolates between a pure random walk and a process where all nodes have the same probability…

Physics and Society · Physics 2015-06-26 Santo Fortunato , Alessandro Flammini

In real-world networks, predicting the weight (strength) of links is as crucial as predicting the existence of the links themselves. Previous studies have primarily used shallow graph features for link weight prediction, limiting the…

Social and Information Networks · Computer Science 2024-10-29 Jinbi Liang , Cunlai Pu , Xiangbo Shu , Yongxiang Xia , Chengyi Xia

The proliferation of social media has the potential for changing the structure and organization of the web. In the past, scientists have looked at the web as a large connected component to understand how the topology of hyperlinks…

Social and Information Networks · Computer Science 2013-08-27 Tommy Nguyen , Boleslaw K. Szymanski

The PageRank algorithm employed by Google quantifies the importance of each page by the link structure of the web. To reduce the computational burden the distributed randomized PageRank algorithms (DRPA) recently appeared in literature…

Systems and Control · Computer Science 2013-05-15 Wenxiao Zhao , Han-Fu Chen , Hai-Tao Fang

In a former paper the concept of Bipartite PageRank was introduced and a theorem on the limit of authority flowing between nodes for personalized PageRank has been generalized. In this paper we want to extend those results to multimodal…

Social and Information Networks · Computer Science 2026-04-08 M. A. Kłopotek , S. T. Wierzchoń , R. A. Kłopotek

Inferring missing links or detecting spurious ones based on observed graphs, known as link prediction, is a long-standing challenge in graph data analysis. With the recent advances in deep learning, graph neural networks have been used for…

Social and Information Networks · Computer Science 2023-01-03 Xingping Xian , Tao Wu , Xiaoke Ma , Shaojie Qiao , Yabin Shao , Chao Wang , Lin Yuan , Yu Wu

As a measure of vertex importance according to the graph structure, PageRank has been widely applied in various fields. While many PageRank algorithms have been proposed in the past decades, few of them take into account whether the graph…

Networking and Internet Architecture · Computer Science 2023-03-07 Qi Zhang , Rongxia Tang , Zhengan Yao , Zanbo Zhang

Rapid discovery of new reactions and molecules in recent years has been facilitated by the advancements in high throughput screening, accessibility to a much more complex chemical design space, and the development of accurate molecular…

Molecular Networks · Quantitative Biology 2023-03-28 Vipul Mann , Venkat Venkatasubramanian

Networks constitute efficient tools for assessing universal features of complex systems. In physical contexts, classical as well as quantum, networks are used to describe a wide range of phenomena, such as phase transitions, intricate…

Quantum Physics · Physics 2016-01-22 Jaroslav Novotný , Gernot Alber , Igor Jex