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Using a combination of the replica-exchange Monte Carlo algorithm and the multicanonical method, we investigate the influence of bending stiffness on the conformational phases of a bead-stick homopolymer model and present the pseudo-phase…

Soft Condensed Matter · Physics 2016-03-30 Martin Marenz , Wolfhard Janke

The mechanical properties of polymer knots under stretching in a bad or good solvent are investigated by applying a given force $F$ to a point of the knot while keeping another point fixed. The Monte Carlo sampling of the polymer…

Soft Condensed Matter · Physics 2015-12-15 Yani Zhao , Franco Ferrari

We study the hydrodynamics of spherical spinners suspended in a Newtonian fluid at inertial regime. We observe a spontaneous condensation of the spinners into particle rich regions, at low but finite particle Reynolds numbers and volume…

Soft Condensed Matter · Physics 2020-04-01 Zaiyi Shen , Juho S. Lintuvuori

Some recent results on the rotational dynamics of polymers are reviewed and extended. We focus here on the relaxation of a polymer, either flexible or semiflexible, initially wrapped around a rigid rod. We also study the steady polymer…

Statistical Mechanics · Physics 2015-06-22 Jean-Charles Walter , Michiel Laleman , Marco Baiesi , Enrico Carlon

Colloidal spheres driven through water along a circular path by an optical ring trap display unexpected dynamical correlations. We use Stokesian Dynamics simulations and a simple analytical model to demonstrate that the path's curvature…

Soft Condensed Matter · Physics 2011-10-12 Yulia Sokolov , Derek Frydel , David G. Grier , Haim Diamant , Yael Roichman

Mixtures of polymers of varying topologies and stiffnesses display complex emergent rheological properties that often cannot be predicted from their single-component counterparts. For example, entangled blends of ring and linear polymers…

Soft Condensed Matter · Physics 2022-11-23 Karthik R. Peddireddy , Ryan Clairmont , Rae M. Robertson-Anderson

When groups of inertial swimmers move together, hydrodynamic interactions play a key role in shaping their collective dynamics, including the cohesion of the group. To explore how these interactions influence group cohesion, we develop a…

Fluid Dynamics · Physics 2025-05-23 Mohamed Niged Mabrouk , Daniel Floryan

Polymer-related materials exhibit rich glassy behaviors at different length scales due to their various molecular structures and topological constraints. Recent studies have identified transient interpenetration of the long-chain rings…

Soft Condensed Matter · Physics 2024-07-08 Jian Li , Bokai Zhang , Yushan Li

The coupled dynamics of entangled polymers which span a broad time and length scales govern the unique viscoelastic properties of polymers. To follow chain mobility by numerical simulations from the intermediate Rouse and reptation regimes…

Soft Condensed Matter · Physics 2016-11-03 Gary S. Grest

Ring polymers exhibit unique flow properties due to their closed chain topology. Despite recent progress, we have not yet achieved a full understanding of the nonequilibrium flow behavior of rings in nondilute solutions where intermolecular…

We use Brownian dynamics (BD) simulations and single molecule experiments to investigate the influence of topological constraints and hydrodynamic interactions on the dynamics and rheology of solutions of ring-linear polymer blends at the…

Soft Condensed Matter · Physics 2021-07-07 Charles D. Young , Yuecheng Zhou , Charles M. Schroeder , Charles E. Sing

We study numerically the hydrodynamics of a self-propelled particle system, consisting of spherical squirmers sedimented on a flat surface. We observe the emergence of dynamic structures, due to the interplay of particle-particle and…

Soft Condensed Matter · Physics 2019-12-20 Zaiyi Shen , Juho S. Lintuvuori

We consider the internal dynamics of the polymer molecule which is injected in the chaotic flow with strong mean shear component. The flow geometry corresponds to the recent experiments on the elastic turbulence (Groisman, Steinberg 2000).…

Chaotic Dynamics · Physics 2007-05-23 K. S. Turitsyn

We describe the effect of hydrodynamic interactions in the sedimentation of a pair of inextensible semiflexible filaments under a uniform constant force at low Reynolds numbers. We have analyzed the different regimes and the morphology of…

Soft Condensed Matter · Physics 2009-11-13 Isaac Llopis , Ignacio Pagonabarraga , Marco Cosentino Lagomarsino , Christopher P. Lowe

The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…

Statistical Mechanics · Physics 2009-10-22 Marco Baiesi , Enzo Orlandini , Stuart G. Whittington

We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…

Soft Condensed Matter · Physics 2008-08-14 Wolfram Mobius , Erwin Frey , Ulrich Gerland

We study the emerging self-organization in active ring suspensions, focusing on how the rings' orientational order and geometric entanglement vary with density and spatial confinement. To quantify entanglement, we introduce the wrapping…

Soft Condensed Matter · Physics 2025-07-31 Juan Pablo Miranda , Emanuele Locatelli , Cristian Micheletti , Demian Levis , Chantal Valeriani

The contact of a hydrogel during the rotational shearing on glass surface in concentrated polymer solution was observed in situ. Dynamic contact patterns that rotate in-phase with the rotational shearing of the gel were observed for the…

Hydrodynamic interactions can generate rich emergent structures in active matter systems. Using large-scale hydrodynamic simulations, we demonstrate that hydrodynamic coupling alone can drive spontaneous self-organization across a hierarchy…

Soft Condensed Matter · Physics 2025-11-17 Zaiyi Shen , Leilei Wang , Shishuang Zhang , Chenlu Li , Kaili Xie , Xu Zheng , Juho S. Lintuvuori

We investigate with numerical simulations the molecular origin of viscosity in melts of flexible and semiflexible oligomer rings in comparison to corresponding systems with linear chains. The strong increase of viscosity with ring stiffness…

Soft Condensed Matter · Physics 2023-07-28 Ranajay Datta , Fabian Berressem , Friederike Schmid , Arash Nikoubashman , Peter Virnau