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Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Uniform Meaning Representation (UMR) is a novel graph-based semantic representation which captures the core meaning of a text, with flexibility incorporated into the annotation schema such that the breadth of the world's languages can be…

Computation and Language · Computer Science 2026-05-20 Emma Markle , Javier Gutierrez Bach , Shira Wein

Graph alignment, the problem of identifying corresponding nodes across multiple graphs, is fundamental to numerous applications. Most existing unsupervised methods embed node features into latent representations to enable cross-graph…

Machine Learning · Computer Science 2025-09-30 Maysam Behmanesh , Erkan Turan , Maks Ovsjanikov

Symbolic sentence meaning representations, such as AMR (Abstract Meaning Representation) provide expressive and structured semantic graphs that act as intermediates that simplify downstream NLP tasks. However, the instruction-following…

Computation and Language · Computer Science 2024-07-08 Peiran Yao , Kostyantyn Guzhva , Denilson Barbosa

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

The most approaches to Knowledge Base Question Answering are based on semantic parsing. In this paper, we address the problem of learning vector representations for complex semantic parses that consist of multiple entities and relations.…

Computation and Language · Computer Science 2018-08-14 Daniil Sorokin , Iryna Gurevych

Recent works have introduced Abstract Meaning Representation (AMR) for Document-level Event Argument Extraction (Doc-level EAE), since AMR provides a useful interpretation of complex semantic structures and helps to capture long-distance…

Computation and Language · Computer Science 2023-05-31 Yuqing Yang , Qipeng Guo , Xiangkun Hu , Yue Zhang , Xipeng Qiu , Zheng Zhang

In real-world scenarios, texts in a graph are often linked by multiple semantic relations (e.g., papers in an academic graph are referenced by other publications, written by the same author, or published in the same venue), where text…

Computation and Language · Computer Science 2024-07-16 Bowen Jin , Wentao Zhang , Yu Zhang , Yu Meng , Han Zhao , Jiawei Han

User-generated texts available on the web and social platforms are often long and semantically challenging, making them difficult to annotate. Obtaining human annotation becomes increasingly difficult as problem domains become more…

Computation and Language · Computer Science 2023-09-19 Joseph Gatto , Sarah M. Preum

Incorporating external graph knowledge into neural chatbot models has been proven effective for enhancing dialogue generation. However, in conventional graph neural networks (GNNs), message passing on a graph is independent from text,…

Computation and Language · Computer Science 2023-06-29 Chen Tang , Hongbo Zhang , Tyler Loakman , Chenghua Lin , Frank Guerin

As alignment links are not given between English sentences and Abstract Meaning Representation (AMR) graphs in the AMR annotation, automatic alignment becomes indispensable for training an AMR parser. Previous studies formalize it as a…

Computation and Language · Computer Science 2017-02-21 Chenhui Chu , Sadao Kurohashi

Combining the message-passing paradigm with the global attention mechanism has emerged as an effective framework for learning over graphs. The message-passing paradigm and the global attention mechanism fundamentally generate node…

Machine Learning · Computer Science 2025-09-30 Haimin Zhang , Jiahao Xia , Min Xu

Combining large language models with logical reasoning enhances their capacity to address problems in a robust and reliable manner. Nevertheless, the intricate nature of logical reasoning poses challenges when gathering reliable data from…

Naive Retrieval-Augmented Generation (RAG) focuses on individual documents during retrieval and, as a result, falls short in handling networked documents which are very popular in many applications such as citation graphs, social media, and…

Machine Learning · Computer Science 2025-07-15 Yuntong Hu , Zhihan Lei , Zheng Zhang , Bo Pan , Chen Ling , Liang Zhao

Long text generation is an important but challenging task.The main problem lies in learning sentence-level semantic dependencies which traditional generative models often suffer from. To address this problem, we propose a Multi-hop…

Computation and Language · Computer Science 2020-09-29 Liang Zhao , Jingjing Xu , Junyang Lin , Yichang Zhang , Hongxia Yang , Xu Sun

Graph-level contrastive learning, aiming to learn the representations for each graph by contrasting two augmented graphs, has attracted considerable attention. Previous studies usually simply assume that a graph and its augmented graph as a…

Artificial Intelligence · Computer Science 2024-04-15 Yanbei Liu , Yu Zhao , Xiao Wang , Lei Geng , Zhitao Xiao

Graph-structured information offers rich contextual information that can enhance language models by providing structured relationships and hierarchies, leading to more expressive embeddings for various applications such as retrieval,…

Graph Neural Networks (GNNs) have attracted increasing attention in recent years and have achieved excellent performance in semi-supervised node classification tasks. The success of most GNNs relies on one fundamental assumption, i.e., the…

Machine Learning · Computer Science 2024-12-03 Junchao Lin , Yuan Wan , Jingwen Xu , Xingchen Qi

Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a…

Machine Learning · Computer Science 2018-09-13 Yu Jin , Joseph F. JaJa