Related papers: Efficient Implementation of Color Coding Algorithm…
In this paper we investigate the colorful components framework, motivated by applications emerging from comparative genomics. The general goal is to remove a collection of edges from an undirected vertex-colored graph $G$ such that in the…
Graph pattern matching is often defined in terms of subgraph isomorphism, an NP-complete problem. To lower its complexity, various extensions of graph simulation have been considered instead. These extensions allow pattern matching to be…
In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…
Given an undirected graph $G=(V,E)$ with a set of vertices $V$ and a set of edges $E$, a graph coloring problem involves finding a partition of the vertices into different independent sets. In this paper we present a new framework that…
Coloring is one of the most famous problems in graph theory. The coloring problem on undirected graphs has been well studied, whereas there are very few results for coloring problems on directed graphs. An oriented k-coloring of an oriented…
In modern applications of graphs algorithms, where the graphs of interest are large and dynamic, it is unrealistic to assume that an input representation contains the full information of a graph being studied. Hence, it is desirable to use…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…
We propose a novel benchmarking methodology for graph neural networks (GNNs) based on the graph alignment problem, a combinatorial optimization task that generalizes graph isomorphism by aligning two unlabeled graphs to maximize overlapping…
Given a graph $F$, let $I(F)$ be the class of graphs containing $F$ as an induced subgraph. Let $W[F]$ denote the minimum $k$ such that $I(F)$ is definable in $k$-variable first-order logic. The recognition problem of $I(F)$, known as…
A graph $G$ covers a graph $H$ if there exists a locally bijective homomorphism from $G$ to $H$. We deal with regular covers where this homomorphism is prescribed by the action of a semiregular subgroup of $\textrm{Aut}(G)$. We study…
In this paper, a new information theoretic framework for graph matching is introduced. Using this framework, the graph isomorphism and seeded graph matching problems are studied. The maximum degree algorithm for graph isomorphism is…
This paper studies the fundamental problem of graph coloring in fully dynamic graphs. Since the problem of computing an optimal coloring, or even approximating it to within $n^{1-\epsilon}$ for any $\epsilon > 0$, is NP-hard in static…
It is well known [Lov\'asz, 67] that up to isomorphism a graph~$G$ is determined by the homomorphism counts $\hom(F, G)$, i.e., the number of homomorphisms from $F$ to $G$, where $F$ ranges over all graphs. Thus, in principle, we can answer…
Graph isomorphism problem is a known hard problem. In this paper, a novel randomized algorithm is proposed for this problem which is very simple and fast. It solves the graph isomorphism problem with running time O(n^2.373) for any pair of…
In the $\ell$-Coloring Problem, we are given a graph on $n$ nodes, and tasked with determining if its vertices can be properly colored using $\ell$ colors. In this paper we study below-guarantee graph coloring, which tests whether an…
The remarkable growth and significant success of machine learning have expanded its applications into programming languages and program analysis. However, a key challenge in adopting the latest machine learning methods is the representation…
Assume that a graph $G$ models a detection system for a facility with a possible "intruder," or a multiprocessor network with a possible malfunctioning processor. We consider the problem of placing (the minimum number of) detectors at a…
Subgraph isomorphism counting is an important problem on graphs, as many graph-based tasks exploit recurring subgraph patterns. Classical methods usually boil down to a backtracking framework that needs to navigate a huge search space with…
The AHU-algorithm solves the computationally difficult graph isomorphism problem for rooted trees, and does so with a linear time complexity. Although the AHU-algorithm has remained state of the art for almost 50 years, it has been…
An $H$-graph is an intersection graph of connected subgraphs of a suitable subdivision of a fixed graph $H$. Many important classes of graphs, including interval graphs, circular-arc graphs, and chordal graphs, can be expressed as…