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Much of biomedical and healthcare data is encoded in discrete, symbolic form such as text and medical codes. There is a wealth of expert-curated biomedical domain knowledge stored in knowledge bases and ontologies, but the lack of reliable…

Artificial Intelligence · Computer Science 2020-06-25 David Chang , Ivana Balazevic , Carl Allen , Daniel Chawla , Cynthia Brandt , Richard Andrew Taylor

Knowledge graph is a popular format for representing knowledge, with many applications to semantic search engines, question-answering systems, and recommender systems. Real-world knowledge graphs are usually incomplete, so knowledge graph…

Machine Learning · Computer Science 2023-04-26 Hung Nghiep Tran , Atsuhiro Takasu

Knowledge graph embedding models have gained significant attention in AI research. Recent works have shown that the inclusion of background knowledge, such as logical rules, can improve the performance of embeddings in downstream machine…

Artificial Intelligence · Computer Science 2019-08-21 Mojtaba Nayyeri , Chengjin Xu , Jens Lehmann , Hamed Shariat Yazdi

Representation learning has recently been successfully used to create vector representations of entities in language learning, recommender systems and in similarity learning. Graph embeddings exploit the locality structure of a graph and…

Machine Learning · Computer Science 2020-02-24 Shalin Shah , Venkataramana Kini

State-of-the-art recommendation algorithms -- especially the collaborative filtering (CF) based approaches with shallow or deep models -- usually work with various unstructured information sources for recommendation, such as textual…

Information Retrieval · Computer Science 2018-09-18 Yongfeng Zhang , Qingyao Ai , Xu Chen , Pengfei Wang

Representation learning on graphs, also called graph embedding, has demonstrated its significant impact on a series of machine learning applications such as classification, prediction and recommendation. However, existing work has largely…

Machine Learning · Computer Science 2022-06-28 Yifan Hou , Hongzhi Chen , Changji Li , James Cheng , Ming-Chang Yang

Reasoning is essential for the development of large knowledge graphs, especially for completion, which aims to infer new triples based on existing ones. Both rules and embeddings can be used for knowledge graph reasoning and they have their…

Artificial Intelligence · Computer Science 2019-03-22 Wen Zhang , Bibek Paudel , Liang Wang , Jiaoyan Chen , Hai Zhu , Wei Zhang , Abraham Bernstein , Huajun Chen

In recent years, there has been a resurgence in methods that use distributed (neural) representations to represent and reason about semantic knowledge for robotics applications. However, while robots often observe previously unknown…

Robotics · Computer Science 2021-05-11 Angel Daruna , Mehul Gupta , Mohan Sridharan , Sonia Chernova

We propose a new method for embedding graphs while preserving directed edge information. Learning such continuous-space vector representations (or embeddings) of nodes in a graph is an important first step for using network information…

Machine Learning · Computer Science 2017-09-15 Sami Abu-El-Haija , Bryan Perozzi , Rami Al-Rfou

Inductive knowledge graph completion has been considered as the task of predicting missing triplets between new entities that are not observed during training. While most inductive knowledge graph completion methods assume that all entities…

Machine Learning · Computer Science 2023-08-21 Jaejun Lee , Chanyoung Chung , Joyce Jiyoung Whang

This paper explores entity embedding effectiveness in ad-hoc entity retrieval, which introduces distributed representation of entities into entity retrieval. The knowledge graph contains lots of knowledge and models entity semantic…

Information Retrieval · Computer Science 2019-08-29 Zhenghao Liu , Chenyan Xiong , Maosong Sun , Zhiyuan Liu

Since real-world objects and their interactions are often multi-modal and multi-typed, heterogeneous networks have been widely used as a more powerful, realistic, and generic superclass of traditional homogeneous networks (graphs).…

Social and Information Networks · Computer Science 2020-12-18 Carl Yang , Yuxin Xiao , Yu Zhang , Yizhou Sun , Jiawei Han

We focus our attention on the link prediction problem for knowledge graphs, which is treated herein as a binary classification task on neural embeddings of the entities. By comparing, combining and extending different methodologies for link…

Artificial Intelligence · Computer Science 2018-07-30 Asan Agibetov , Matthias Samwald

Most of the existing graph embedding methods focus on nodes, which aim to output a vector representation for each node in the graph such that two nodes being "close" on the graph are close too in the low-dimensional space. Despite the…

Social and Information Networks · Computer Science 2019-02-13 Vincent W. Zheng , Sandro Cavallari , Hongyun Cai , Kevin Chen-Chuan Chang , Erik Cambria

Knowledge graph embedding plays an important role in knowledge representation, reasoning, and data mining applications. However, for multiple cross-domain knowledge graphs, state-of-the-art embedding models cannot make full use of the data…

Machine Learning · Computer Science 2021-08-17 Hao Peng , Haoran Li , Yangqiu Song , Vincent Zheng , Jianxin Li

Motivation: Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries. In the past years, feature learning methods that are…

Quantitative Methods · Quantitative Biology 2017-05-01 Mona Alshahrani , Mohammed Asif Khan , Omar Maddouri , Akira R Kinjo , Núria Queralt-Rosinach , Robert Hoehndorf

We present a novel extension to embedding-based knowledge graph completion models which enables them to perform open-world link prediction, i.e. to predict facts for entities unseen in training based on their textual description. Our model…

Artificial Intelligence · Computer Science 2020-01-10 Haseeb Shah , Johannes Villmow , Adrian Ulges , Ulrich Schwanecke , Faisal Shafait

Many real-world and artificial systems and processes can be represented as graphs. Some examples of such systems include social networks, financial transactions, supply chains, and molecular structures. In many of these cases, one needs to…

Machine Learning · Computer Science 2025-03-21 Ashkan Dehghan , Paweł Prałat , François Théberge

Graph-structured data exhibit substantial heterogeneity in where their predictive signals originate: in some domains, node-level semantics dominate, while in others, structural patterns play a central role. This structure-semantics…

Computation and Language · Computer Science 2026-04-03 Safal Thapaliya , Zehong Wang , Jiazheng Li , Ziming Li , Yanfang Ye , Chuxu Zhang

Entity Resolution (ER) is a constitutional part for integrating different knowledge graphs in order to identify entities referring to the same real-world object. A promising approach is the use of graph embeddings for ER in order to…

Machine Learning · Computer Science 2021-01-18 Daniel Obraczka , Jonathan Schuchart , Erhard Rahm