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We propose a new framework, called Hierarchical Multi-resolution Mesh Networks (HMMNs), which establishes a set of brain networks at multiple time resolutions of fMRI signal to represent the underlying cognitive process. The suggested…

Neural and Evolutionary Computing · Computer Science 2017-01-13 Itir Onal Ertugrul , Mete Ozay , Fatos Tunay Yarman Vural

This study examines long-term trends and shifting behavior in the collaboration network of mathematics literature, using a subset of data from Mathematical Reviews spanning 1985-2009. Rather than modeling the network cumulatively, this…

A central premise in evolutionary biology is that individual variation can generate information asymmetries that facilitate the emergence of hierarchical organisation. To examine this process, we develop an agent-based model (ABM) to…

Multiagent Systems · Computer Science 2026-05-06 Shanshan Mao , Peter Tino

In this paper, we proposed an evolving model via the hypergraph to illustrate the evolution of the citation network. In the evolving model, we consider the mechanism combined with preferential attachment and the aging influence. Simulation…

Physics and Society · Physics 2014-06-05 Feng Hu , Hai-Xing Zhao , Xiu-Xiu Zhan , Chuang Liu , Zi-Ke Zhang

Constraints placed upon the phenotypes of organisms result from their interactions with the environment. Over evolutionary timescales, these constraints feed back onto smaller molecular subnetworks comprising the organism. The evolution of…

Molecular Networks · Quantitative Biology 2015-06-10 Cameron Smith , Ximo Pechuan , Raymond S. Puzio , Daniel Biro , Aviv Bergman

The idea that complex systems have a hierarchical modular organization originates in the early 1960s and has recently attracted fresh support from quantitative studies of large scale, real-life networks. Here we investigate the hierarchical…

Data Analysis, Statistics and Probability · Physics 2010-04-20 D. Meunier , R. Lambiotte , A. Fornito , K. D. Ersche , E. T. Bullmore

This study aims to reveal what kind of topics emerged in the biomedical domain by retrospectively analyzing newly added MeSH (Medical Subject Headings) terms from 2001 to 2010 and how they have been used for indexing since their inclusion…

Digital Libraries · Computer Science 2021-09-15 Kun Lu , Guancan Yang , Xue Wang

A great variety of systems in nature, society and technology -- from the web of sexual contacts to the Internet, from the nervous system to power grids -- can be modeled as graphs of vertices coupled by edges. The network structure,…

Adaptation and Self-Organizing Systems · Physics 2012-10-10 Petter Holme , Jari Saramäki

Bibliometric studies based on the Web of Science (WOS) database have become an increasingly popular method for analysing the structure of scientific research. So do network approaches, which, based on empirical data, make it possible to…

Digital Libraries · Computer Science 2023-08-03 Tanya Araújo , Alexandre Abreu , Francisco Louçã

Hierarchical structures exist in both linguistics and Natural Language Processing (NLP) tasks. How to design RNNs to learn hierarchical representations of natural languages remains a long-standing challenge. In this paper, we define two…

Computation and Language · Computer Science 2021-06-07 Zhaoxin Luo , Michael Zhu

Contacts between individuals serve as pathways where infections may propagate. These contact patterns can be represented by network structures. Static structures have been the common modeling paradigm but recent results suggest that…

Populations and Evolution · Quantitative Biology 2012-04-25 Luis Enrique Correa Rocha , Adeline Decuyper , Vincent D Blondel

Hierarchical networks are attracting a renewal interest for modelling the organization of a number of biological systems and for tackling the complexity of statistical mechanical models beyond mean-field limitations. Here we consider the…

Disordered Systems and Neural Networks · Physics 2016-01-26 Elena Agliari , Adriano Barra , Andrea Galluzzi , Francesco Guerra , Daniele Tantari , Flavia Tavani

Temporal networks are widely used models for describing the architecture of complex systems. Network memory -- that is the dependence of a temporal network's structure on its past -- has been shown to play a prominent role in diffusion,…

Physics and Society · Physics 2020-04-28 Oliver E. Williams , Lucas Lacasa , Ana P. Millán , Vito Latora

Complex networks are used to depict topological features of complex systems. The structure of a network characterizes the interactions among elements of the system, and facilitates the study of many dynamical processes taking place on it.…

Physics and Society · Physics 2012-06-22 Yan Zhang , Lin Wang , Yi-Qing Zhang , Xiang Li

Many biological phenomena or social events critically depend on how information evolves in complex networks. However, a general theory to characterize information evolution is yet absent. Consequently, numerous unknowns remain about the…

Biological Physics · Physics 2022-07-20 Yang Tian , Guoqi Li , Pei Sun

Interactions are ubiquitous across biological systems. These interactions can be abstracted as patterns of connections among distinct units such as genes, proteins, individual organisms, or species which form a hierarchy of biological…

Populations and Evolution · Quantitative Biology 2018-09-18 Pierre-Olivier Montiglio , Kiyoko M. Gotanda , Claudius F. Kratochwil , Kate L. Laskowski , Carey D. Nadell , Damien R. Farine

Connectivity patterns of relevance in neuroscience and systems biology can be encoded in hierarchical modular networks (HMNs). Moreover, recent studies highlight the role of hierarchical modular organization in shaping brain activity…

Disordered Systems and Neural Networks · Physics 2017-11-22 Ali Safari , Paolo Moretti , Miguel A. Muñoz

The exploration of the structural topology and the organizing principles of genome-based large-scale metabolic networks is essential for studying possible relations between structure and functionality of metabolic networks. Topological…

Molecular Networks · Quantitative Biology 2007-05-23 Jing Zhao , Hong Yu , Jian-Hua Luo , Zhi-Wei Cao , Yi-Xue Li

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

The investigation of community structure in networks is a task of great importance in many disciplines, namely physics, sociology, biology and computer science where systems are often represented as graphs. One of the challenges is to find…

Physics and Society · Physics 2015-02-17 Emanuele Massaro , Franco Bagnoli