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Introduced about thirty years ago in the field of Data Compression, the Burrows-Wheeler Transform (BWT) is a string transformation that, besides being a booster of the performance of memoryless compressors, plays a fundamental role in the…

Data Structures and Algorithms · Computer Science 2023-05-09 Raffaele Giancarlo , Giovanni Manzini , Antonio Restivo , Giovanna Rosone , Marinella Sciortino

The Burrows-Wheeler Transform (BWT) is among the most influential discoveries in text compression and DNA storage. It is a reversible preprocessing step that rearranges an $n$-letter string into runs of identical characters (by exploiting…

Data Structures and Algorithms · Computer Science 2018-12-06 Sandip Sinha , Omri Weinstein

The Burrows-Wheeler Transform is a string transformation that plays a fundamental role for the design of self-indexing compressed data structures. Over the years, researchers have successfully extended this transformation outside the…

Data Structures and Algorithms · Computer Science 2019-02-05 Raffaele Giancarlo , Giovanni Manzini , Giovanna Rosone , Marinella Sciortino

The Burrows-Wheeler Transform (BWT) is an invertible text transformation that permutes symbols of a text according to the lexicographical order of its suffixes. BWT is the main component of popular lossless compression programs (such as…

Data Structures and Algorithms · Computer Science 2021-04-13 Dominik Kempa , Tomasz Kociumaka

The Burrows-Wheeler Transform (BWT) of a string is an invertible permutation of the string, which can be used for data compression and compact indexes for string pattern matching. Ganguly et al. [SODA, 2017] introduced the parameterized BWT…

Data Structures and Algorithms · Computer Science 2025-05-12 Shogen Kawanami , Kento Iseri , Tomohiro I

The Burrows-Wheeler Transform (BWT) is a word transformation introduced in 1994 for Data Compression. It has become a fundamental tool for designing self-indexing data structures, with important applications in several area in science and…

Data Structures and Algorithms · Computer Science 2019-07-05 Raffaele Giancarlo , Giovanni Manzini , Antonio Restivo , Giovanna Rosone , Marinella Sciortino

The Burrows-Wheeler transform (BWT) is a reversible transform that converts a string $w$ into another string $\mathsf{BWT}(w)$. The size of the run-length encoded BWT (RLBWT) can be interpreted as a measure of repetitiveness in the class of…

Discrete Mathematics · Computer Science 2024-11-19 Hideo Bannai , Tomohiro I , Yuto Nakashima

The Burrows-Wheeler Transform (BWT) is an efficient invertible text transformation algorithm with the properties of tending to group identical characters together in a run, and enabling search of the text. This transformation has extensive…

Human-Computer Interaction · Computer Science 2024-02-28 Lily Major , Dave Davies , Amanda Clare , Jacqueline W. Daykin , Benjamin Mora , Christine Zarges

The Burrows-Wheeler-Transform (BWT) is an invertible permutation of a text known to be highly compressible but also useful for sequence analysis, what makes the BWT highly attractive for lossless data compression. In this paper, we present…

Data Structures and Algorithms · Computer Science 2018-04-06 Uwe Baier

One of the most well-known variants of the Burrows-Wheeler transform (BWT) [Burrows and Wheeler, 1994] is the bijective BWT (BBWT) [Gil and Scott, arXiv 2012], which applies the extended BWT (EBWT) [Mantaci et al., TCS 2007] to the multiset…

Data Structures and Algorithms · Computer Science 2020-04-28 Dominik Köppl , Daiki Hashimoto , Diptarama Hendrian , Ayumi Shinohara

The Burrows-Wheeler transform (BWT) is a well studied text transformation widely used in data compression and text indexing. The BWT of two strings can also provide similarity measures between them, based on the observation that the more…

Data Structures and Algorithms · Computer Science 2020-09-10 Felipe A. Louza , Guilherme P. Telles , Simon Gog , Liang Zhao

Burrows-Wheeler transform (BWT) is an invertible text transformation that, given a text $T$ of length $n$, permutes its symbols according to the lexicographic order of suffixes of $T$. BWT is one of the most heavily studied algorithms in…

Data Structures and Algorithms · Computer Science 2020-12-09 Dominik Kempa , Tomasz Kociumaka

The Burrows-Wheeler-Transform (BWT), a reversible string transformation, is one of the fundamental components of many current data structures in string processing. It is central in data compression, as well as in efficient query algorithms…

Data Structures and Algorithms · Computer Science 2024-04-16 Sara Giuliani , Shunsuke Inenaga , Zsuzsanna Lipták , Nicola Prezza , Marinella Sciortino , Anna Toffanello

The Burrows-Wheeler Transform (BWT) is often taught in undergraduate courses on algorithmic bioinformatics, because it underlies the FM-index and thus important tools such as Bowtie and BWA. Its admirers consider the BWT a thing of beauty…

Data Structures and Algorithms · Computer Science 2022-08-23 Travis Gagie , Giovanni Manzini , Marinella Sciortino

The Burrows-Wheeler transform (BWT) is a permutation whose applications are prevalent in data compression and text indexing. The bijective BWT (BBWT) is a bijective variant of it. Although it is known that the BWT can be constructed in…

Data Structures and Algorithms · Computer Science 2021-04-23 Hideo Bannai , Juha Kärkkäinen , Dominik Köppl , Marcin Picatkowski

The Burrows-Wheeler Transform (BWT) is a fundamental component in many data structures for text indexing and compression, widely used in areas such as bioinformatics and information retrieval. The extended BWT (eBWT) generalizes the…

Data Structures and Algorithms · Computer Science 2025-06-06 Florian Ingels , Anaïs Denis , Bastien Cazaux

The Burrows-Wheeler Transform (BWT) is a string transformation technique widely used in areas such as bioinformatics and file compression. Many applications combine a run-length encoding (RLE) with the BWT in a way which preserves the…

Discrete Mathematics · Computer Science 2025-09-18 Lily Major , Amanda Clare , Jacqueline W. Daykin , Benjamin Mora , Christine Zarges

It is known that the exact form of the Burrows-Wheeler-Transform (BWT) of a string collection depends, in most implementations, on the input order of the strings in the collection. Reordering strings of an input collection affects the…

Data Structures and Algorithms · Computer Science 2022-12-05 Davide Cenzato , Veronica Guerrini , Zsuzsanna Lipták , Giovanna Rosone

In recent years, the focus of bioinformatics research has moved from individual sequences to collections of sequences. Given the fundamental role of the Burrows-Wheeler Transform (BWT) in string processing, a number of dedicated tools have…

Data Structures and Algorithms · Computer Science 2025-05-28 Davide Cenzato , Zsuzsanna Lipták

Given a string of characters, the Burrows-Wheeler Transform rearranges the characters in it so as to produce another string of the same length which is more amenable to compression techniques such as move to front, run-length encoding, and…

Data Structures and Algorithms · Computer Science 2012-01-17 Joseph Yossi Gil , David Allen Scott
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