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Interactions are ubiquitous across biological systems. These interactions can be abstracted as patterns of connections among distinct units such as genes, proteins, individual organisms, or species which form a hierarchy of biological…

Populations and Evolution · Quantitative Biology 2018-09-18 Pierre-Olivier Montiglio , Kiyoko M. Gotanda , Claudius F. Kratochwil , Kate L. Laskowski , Carey D. Nadell , Damien R. Farine

Many social and biological networks consist of communities - groups of nodes within which connections are dense, but between which connections are sparser. Recently, there has been considerable interest in designing algorithms for detecting…

Physics and Society · Physics 2009-11-11 Chunguang Li , Philip K. Maini

Networks represent relationships between entities in many complex systems, spanning from online social interactions to biological cell development and brain connectivity. In many cases, relationships between entities are unambiguously…

Social and Information Networks · Computer Science 2018-01-23 Ivan Brugere , Brian Gallagher , Tanya Y. Berger-Wolf

Neural node embeddings have recently emerged as a powerful representation for supervised learning tasks involving graph-structured data. We leverage this recent advance to develop a novel algorithm for unsupervised community discovery in…

Social and Information Networks · Computer Science 2017-06-30 Weicong Ding , Christy Lin , Prakash Ishwar

The goal of community detection algorithms is to identify densely-connected units within large networks. An implicit assumption is that all the constituent nodes belong equally to their associated community. However, some nodes are more…

Social and Information Networks · Computer Science 2016-06-07 Tanmoy Chakraborty , Sriram Srinivasan , Niloy Ganguly , Animesh Mukherjee , Sanjukta Bhowmick

With social media and the according social and ubiquitous applications finding their way into everyday life, there is a rapidly growing amount of user generated content yielding explicit and implicit network structures. We consider social…

Social and Information Networks · Computer Science 2013-09-17 Folke Mitzlaff , Martin Atzmueller , Dominik Benz , Andreas Hotho , Gerd Stumme

Role discovery is the task of dividing the set of nodes on a graph into classes of structurally similar roles. Modern strategies for role discovery typically rely on graph embedding techniques, which are capable of recognising complex local…

Social and Information Networks · Computer Science 2022-06-08 Eoghan Cunningham , Derek Greene

Graph embedding methods are becoming increasingly popular in the machine learning community, where they are widely used for tasks such as node classification and link prediction. Embedding graphs in geometric spaces should aid the…

Network embedding, which aims to learn low-dimensional representations of nodes, has been used for various graph related tasks including visualization, link prediction and node classification. Most existing embedding methods rely solely on…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Homa Hosseinmardi , Emilio Ferrara , Aram Galstyan

Network embedding methods aim at learning low-dimensional latent representation of nodes in a network. These representations can be used as features for a wide range of tasks on graphs such as classification, clustering, link prediction,…

Social and Information Networks · Computer Science 2018-08-09 Haochen Chen , Bryan Perozzi , Rami Al-Rfou , Steven Skiena

A new method for identifying communities in networks is proposed. Reference nodes, either selected using a priory information about the network or according to relevant node measurements, are obtained so as to indicate putative communities.…

Social and Information Networks · Computer Science 2019-11-06 Paulo J. P. de Souza , Cesar H. Comin , Luciano da F. Costa

In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically,…

Physics and Society · Physics 2015-05-30 Hua-Wei Shen , Xue-Qi Cheng , Jia-Feng Guo

The notion of community structure is particularly useful when analyzing complex networks, because it provides an intermediate level, compared to the more classic global (whole network) and local (node neighborhood) approaches. The concept…

Social and Information Networks · Computer Science 2013-12-16 Nicolas Dugué , Vincent Labatut , Anthony Perez

Attention networks have proven to be an effective approach for embedding categorical inference within a deep neural network. However, for many tasks we may want to model richer structural dependencies without abandoning end-to-end training.…

Computation and Language · Computer Science 2017-02-17 Yoon Kim , Carl Denton , Luong Hoang , Alexander M. Rush

Networks are universally considered as complex structures of interactions of large multi-component systems. In order to determine the role that each node has inside a complex network, several centrality measures have been developed. Such…

Physics and Society · Physics 2019-08-20 Malbor Asllani , Bruno Requiao da Cunha , Ernesto Estrada , James P. Gleeson

Any network studied in the literature is inevitably just a sampled representative of its real-world analogue. Additionally, network sampling is lately often applied to large networks to allow for their faster and more efficient analysis.…

Social and Information Networks · Computer Science 2015-04-14 Neli Blagus , Lovro Šubelj , Gregor Weiss , Marko Bajec

Graph representation learning (also called graph embeddings) is a popular technique for incorporating network structure into machine learning models. Unsupervised graph embedding methods aim to capture graph structure by learning a…

Social and Information Networks · Computer Science 2022-01-24 Andrew Stolman , Caleb Levy , C. Seshadhri , Aneesh Sharma

While most network embedding techniques model the relative positions of nodes in a network, recently there has been significant interest in structural embeddings that model node role equivalences, irrespective of their distances to any…

Social and Information Networks · Computer Science 2021-03-01 Jing Zhu , Xingyu Lu , Mark Heimann , Danai Koutra

The investigation of community structures in networks is an important issue in many domains and disciplines. This problem is relevant for social tasks (objective analysis of relationships on the web), biological inquiries (functional…

Statistical Mechanics · Physics 2009-11-10 Filippo Radicchi , Claudio Castellano , Federico Cecconi , Vittorio Loreto , Domenico Parisi

A substantial volume of research has been devoted to studies of community structure in networks, but communities are not the only possible form of large-scale network structure. Here we describe a broad extension of community structure that…

Social and Information Networks · Computer Science 2015-08-26 M. E. J. Newman , Tiago P. Peixoto