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Hidden tree Markov models allow learning distributions for tree structured data while being interpretable as nondeterministic automata. We provide a concise summary of the main approaches in literature, focusing in particular on the…

Machine Learning · Statistics 2018-06-01 Davide Bacciu , Daniele Castellana

We consider generalizations of Schuetzenberger's promotion operator on the set L of linear extensions of a finite poset. This gives rise to a strongly connected graph on L. In earlier work (arXiv:1205.7074), we studied promotion-based…

Probability · Mathematics 2014-06-25 Arvind Ayyer , Steven Klee , Anne Schilling

It has been demonstrated that excitable media with a tree structure performed better than other network topologies, it is natural to consider neural networks defined on Cayley trees. The investigation of a symbolic space called tree-shift…

Dynamical Systems · Mathematics 2018-02-28 Jung-Chao Ban , Chih-Hung Chang , Nai-Zhu Huang

We study the global and local regularity properties of random wavelet series whose coefficients exhibit correlations given by a tree-indexed Markov chain. We determine the law of the spectrum of singularities of these series, thereby…

Probability · Mathematics 2009-11-13 Arnaud Durand

It is known that the Kimura 3ST model of sequence evolution on phylogenetic trees can be extended quite naturally to arbitrary split systems. However, this extension relies heavily on mathematical peculiarities of the K3ST model, and…

Populations and Evolution · Quantitative Biology 2012-04-24 J. G. Sumner , B. H. Holland , P. D. Jarvis

In [Ald00], Aldous investigates a symmetric Markov chain on cladograms and gives bounds on its mixing and relaxation times. The latter bound was sharpened in [Sch02]. In the present paper we encode cladograms as binary, algebraic measure…

Probability · Mathematics 2020-09-25 Wolfgang Löhr , Leonid Mytnik , Anita Winter

We consider triangular arrays of Markov chains that converge weakly to a diffusion process. Edgeworth type expansions of third order for transition densities are proved. This is done for time horizons that converge to 0. For this purpose we…

Probability · Mathematics 2007-06-13 Valentin Konakov , Enno Mammen

We consider the problem of finding the transition rates of a continuous-time homogeneous Markov chain under the empirical condition that the state changes at most once during a time interval of unit length. It is proven that this…

Probability · Mathematics 2023-06-01 Philippe Carette , Marie-Anne Guerry

We consider continuous-space, discrete-time Markov chains on $\mathbb{R}^d$, that admit a finite number $N$ of metastable states. Our main motivation for investigating these processes is to analyse random Poincar\'e maps, which describe…

Probability · Mathematics 2025-08-19 Nils Berglund

The hierarchical and recursive expressive capability of rooted trees is applicable to represent statistical models in various areas, such as data compression, image processing, and machine learning. On the other hand, such hierarchical…

Machine Learning · Computer Science 2022-01-25 Yuta Nakahara , Shota Saito , Akira Kamatsuka , Toshiyasu Matsushima

Consider a compact metric space $S$ and a pair $(j,k)$ with $k \ge 2$ and $1 \le j \le k$. For any probability distribution $\theta \in P(S)$, define a Markov chain on $S$ by: from state $s$, take $k$ i.i.d. ($\theta$) samples, and jump to…

Probability · Mathematics 2024-03-28 David J. Aldous , Madelyn Cruz , Shi Feng

Bifurcating Markov chains (BMC) are Markov chains indexed by a full binary tree representing the evolution of a trait along a population where each individual has two children. Motivated by the functional estimation of the density of the…

Statistics Theory · Mathematics 2021-06-17 S. Valère Bitseki Penda , Jean-François Delmas

The reconstruction of phylogenetic trees from molecular sequence data relies on modelling site substitutions by a Markov process, or a mixture of such processes. In general, allowing mixed processes can result in different tree topologies…

Populations and Evolution · Quantitative Biology 2016-09-07 Marta Casanellas , Mike Steel

We investigate the spectrum of the infinitesimal generator of the continuous time random walk on a randomly weighted oriented graph. This is the non-Hermitian random nxn matrix L defined by L(j,k)=X(j,k) if k<>j and…

Probability · Mathematics 2014-02-18 Charles Bordenave , Pietro Caputo , Djalil Chafai

Distributions of triplets in some genetic sequences are examined and found to be well described by a 2-parameter Markov process with a sparse transition matrix. The variances of all the relevant parameters are not large, indicating that…

Biological Physics · Physics 2015-06-26 Yu Shi , Ido Kanter , David Kessler

Motivated by the theory of spin-glasses in physics, we study the so-called reconstruction problem for the related distributions on the tree, and on the sparse random graph $G(n,d/n)$. Both cases, reduce naturally to studying broadcasting…

Discrete Mathematics · Computer Science 2023-09-14 Charilaos Efthymiou , Kostas Zampetakis

Let $T\_n$ denote the set of unrooted labeled trees of size $n$ and let $T\_n$ be a particular (finite, unlabeled) tree. Assuming that every tree of $T\_n$ is equally likely, it is shown that the limiting distribution as $n$ goes to…

Discrete Mathematics · Computer Science 2016-08-16 Frédéric Chyzak , Michael Drmota , Thomas Klausner , Gerard Kok

We first consider the growth of trees by probabilistic attachment of new vertices to leaves. This leads to a growth model based on vertex clusters and probabilities assigned to clusters. This model turns out to be readily applicable to…

Probability · Mathematics 2021-06-15 Nomvelo Sibisi

We present new scalar and matrix Chernoff-style concentration bounds for a broad class of probability distributions over the binary hypercube $\{0,1\}^n$. Motivated by recent tools developed for the study of mixing times of Markov chains on…

Discrete Mathematics · Computer Science 2022-01-07 Tali Kaufman , Rasmus Kyng , Federico Soldá

For a wide class of continuous-time Markov processes, including all irreducible hypoelliptic diffusions evolving on an open, connected subset of $\RL^d$, the following are shown to be equivalent: (i) The process satisfies (a slightly weaker…

Probability · Mathematics 2016-04-27 Ioannis Kontoyiannis , Sean P. Meyn