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Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage sorting or horizontal gene transfer--it can be misleading to…

Populations and Evolution · Quantitative Biology 2016-03-10 Kevin Gori , Tomasz Suchan , Nadir Alvarez , Nick Goldman , Christophe Dessimoz

Understanding the complex structure of multivariate extremes is a major challenge in various fields from portfolio monitoring and environmental risk management to insurance. In the framework of multivariate Extreme Value Theory, a common…

Machine Learning · Statistics 2021-02-09 Hamid Jalalzai , Rémi Leluc

This paper presents a novel clustering concept that is based on jointly learned nonlinear transforms (NTs) with priors on the information loss and the discrimination. We introduce a clustering principle that is based on evaluation of a…

Machine Learning · Computer Science 2019-01-31 Dimche Kostadinov , Behrooz Razeghi , Taras Holotyak , Slava Voloshynovskiy

This paper presents a neural network-based end-to-end clustering framework. We design a novel strategy to utilize the contrastive criteria for pushing data-forming clusters directly from raw data, in addition to learning a feature embedding…

Machine Learning · Computer Science 2016-04-27 Yen-Chang Hsu , Zsolt Kira

Multi-vehicle interaction behavior classification and analysis offer in-depth knowledge to make an efficient decision for autonomous vehicles. This paper aims to cluster a wide range of driving encounter scenarios based only on…

Robotics · Computer Science 2020-06-16 Wenshuo Wang , Aditya Ramesh , Ding Zhao

Hands-on cybersecurity training allows students and professionals to practice various tools and improve their technical skills. The training occurs in an interactive learning environment that enables completing sophisticated tasks in…

Cryptography and Security · Computer Science 2023-07-21 Valdemar Švábenský , Jan Vykopal , Pavel Čeleda , Kristián Tkáčik , Daniel Popovič

An approach to improve neural network interpretability is via clusterability, i.e., splitting a model into disjoint clusters that can be studied independently. We define a measure for clusterability and show that pre-trained models form…

Machine Learning · Computer Science 2025-07-28 Satvik Golechha , Maheep Chaudhary , Joan Velja , Alessandro Abate , Nandi Schoots

Research in the social sciences is increasingly based on large and complex data collections, where individual data sets from different domains are linked and integrated to allow advanced analytics. A popular type of data used in such a…

Databases · Computer Science 2018-07-09 Charini Nanayakkara , Peter Christen , Thilina Ranbaduge

Graph-based clustering has shown promising performance in many tasks. A key step of graph-based approach is the similarity graph construction. In general, learning graph in kernel space can enhance clustering accuracy due to the…

Machine Learning · Computer Science 2019-05-22 Zhao Kang , Honghui Xu , Boyu Wang , Hongyuan Zhu , Zenglin Xu

Clustering algorithms fundamentally group data points by characteristics to identify patterns. Over the past two decades, researchers have extended these methods to analyze trajectories of humans, animals, and vehicles, studying their…

Machine Learning · Computer Science 2025-12-17 Atieh Rahmani , Mansoor Davoodi , Justin M. Calabrese

Cluster analysis plays an indispensable role in machine learning and data mining. Learning a good data representation is crucial for clustering algorithms. Recently, deep clustering, which can learn clustering-friendly representations using…

Machine Learning · Computer Science 2022-10-11 Yazhou Ren , Jingyu Pu , Zhimeng Yang , Jie Xu , Guofeng Li , Xiaorong Pu , Philip S. Yu , Lifang He

Hierarchical clustering is a stronger extension of one of today's most influential unsupervised learning methods: clustering. The goal of this method is to create a hierarchy of clusters, thus constructing cluster evolutionary history and…

Data Structures and Algorithms · Computer Science 2021-01-14 MohammadTaghi Hajiaghayi , Marina Knittel

We propose a novel end-to-end neural network architecture that, once trained, directly outputs a probabilistic clustering of a batch of input examples in one pass. It estimates a distribution over the number of clusters $k$, and for each $1…

Machine Learning · Computer Science 2018-07-12 Benjamin Bruno Meier , Ismail Elezi , Mohammadreza Amirian , Oliver Durr , Thilo Stadelmann

Clustering is a fundamental learning task widely used as a first step in data analysis. For example, biologists use cluster assignments to analyze genome sequences, medical records, or images. Since downstream analysis is typically…

Machine Learning · Computer Science 2024-06-11 Jonathan Svirsky , Ofir Lindenbaum

Research on cluster analysis for categorical data continues to develop, with new clustering algorithms being proposed. However, in this context, the determination of the number of clusters is rarely addressed. In this paper, we propose a…

Methodology · Statistics 2014-09-29 Cláudia Silvestre , Margarida G. M. S. Cardoso , Mário A. T. Figueiredo

Clustering is an essential data mining tool that aims to discover inherent cluster structure in data. For most applications, applying clustering is only appropriate when cluster structure is present. As such, the study of clusterability,…

Machine Learning · Statistics 2018-10-30 A. Adolfsson , M. Ackerman , N. C. Brownstein

Many real-world systems can be studied in terms of pattern recognition tasks, so that proper use (and understanding) of machine learning methods in practical applications becomes essential. While a myriad of classification methods have been…

Cluster analysis often serves as the initial step in the process of data classification. In this paper, the problem of clustering different length input data is considered. The edit distance as the minimum number of elementary edit…

Information Retrieval · Computer Science 2007-05-23 Slobodan Petrovic , Gonzalo Alvarez

The clustering of bounded data presents unique challenges in statistical analysis due to the constraints imposed on the data values. This paper introduces a novel method for model-based clustering specifically designed for bounded data.…

Methodology · Statistics 2025-05-16 Luca Scrucca

Clustering analysis is one of the most widely used statistical tools in many emerging areas such as microarray data analysis. For microarray and other high-dimensional data, the presence of many noise variables may mask underlying…

Machine Learning · Statistics 2008-03-26 Benhuai Xie , Wei Pan , Xiaotong Shen