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Clinical research often focuses on complex traits in which many variables play a role in mechanisms driving, or curing, diseases. Clinical prediction is hard when data is high-dimensional, but additional information, like domain knowledge…

Methodology · Statistics 2020-05-21 Mirrelijn M. van Nee , Lodewyk F. A. Wessels , Mark A. van de Wiel

Cell state discovery is crucial for understanding biological systems and enhancing medical outcomes. A key aspect of this process is identifying distinct biomarkers that define specific cell states. However, difficulties arise from the…

Human-Computer Interaction · Computer Science 2025-12-19 Rui Sheng , Zelin Zang , Jiachen Wang , Yan Luo , Zixin Chen , Yan Zhou , Shaolun Ruan , Huamin Qu

Scatter plots are widely recognized as fundamental tools for illustrating the relationship between two numerical variables. Despite this, based on solid theoretical foundations, scatter plots generated from pairs of continuous random…

Methodology · Statistics 2025-02-05 Arturo Erdely , Manuel Rubio-Sanchez

As an important method of handling potential uncertainties in numerical simulations, ensemble simulation has been widely applied in many disciplines. Visualization is a promising and powerful ensemble simulation analysis method. However,…

Graphics · Computer Science 2020-11-04 Mingdong Zhang , Li Chen , Quan Li , Xiaoru Yuan , Junhai Yong

We investigate a graph-based approach to exploratory data analysis in the context of network security monitoring. Given a possibly large batch of event logs describing ongoing activity, we first represent these events as a bipartite…

Cryptography and Security · Computer Science 2022-06-22 Corentin Larroche

Analysis of high-dimensional data is currently a popular field of research, thanks to many applications e.g. in genetics (DNA data in genomewide association studies), spectrometry or web analysis. At the same time, the type of problems that…

Methodology · Statistics 2018-05-25 Jozef Jakubik

Despite of various similar features, Functional Data Analysis and High-Dimensional Data Analysis are two major fields in Statistics that grew up recently almost independently one from each other. The aim of this paper is to propose a survey…

Methodology · Statistics 2024-01-29 Germán Aneiros , Silvia Novo , Philippe Vieu

In this paper we propose a framework inspired by interacting particle physics and devised to perform clustering on multidimensional datasets. To this end, any given dataset is modeled as an interacting particle system, under the assumption…

Statistical Mechanics · Physics 2012-07-26 Giuliano Armano , Marco Alberto Javarone

While clustering is one of the most popular methods for data mining, analysts lack adequate tools for quick, iterative clustering analysis, which is essential for hypothesis generation and data reasoning. We introduce Clustrophile, an…

Human-Computer Interaction · Computer Science 2017-10-09 Çağatay Demiralp

Visualization of high-dimensional data is counter-intuitive using conventional graphs. Parallel coordinates are proposed as an alternative to explore multivariate data more effectively. However, it is difficult to extract relevant…

Computation · Statistics 2019-05-27 Shaima Tilouche , Vahid Partovi Nia , Samuel Bassetto

Representation learning is typically applied to only one mode of a data matrix, either its rows or columns. Yet in many applications, there is an underlying geometry to both the rows and the columns. We propose utilizing this coupled…

Machine Learning · Statistics 2018-10-17 Gal Mishne , Eric C. Chi , Ronald R. Coifman

Data clustering is a common unsupervised learning method frequently used in exploratory data analysis. However, identifying relevant structures in unlabeled, high-dimensional data is nontrivial, requiring iterative experimentation with…

Human-Computer Interaction · Computer Science 2018-11-29 Marco Cavallo , Çağatay Demiralp

Multi-view data are commonly encountered in data mining applications. Effective extraction of information from multi-view data requires specific design of clustering methods to cater for data with multiple views, which is non-trivial and…

Machine Learning · Computer Science 2023-02-22 Wei Zhang , Zhaohong Deng , Kup-Sze Choi , Jun Wang , Shitong Wang

Traditional clustering methods are limited when dealing with huge and heterogeneous groups of gene expression data, which motivates the development of bi-clustering methods. Bi-clustering methods are used to mine bi-clusters whose subsets…

Computer Vision and Pattern Recognition · Computer Science 2020-05-13 Kaijie Xu , Witold Pedrycz , Zhiwu Li , Yinghui Quan , Weike Nie

Co-occurrence statistics based word embedding techniques have proved to be very useful in extracting the semantic and syntactic representation of words as low dimensional continuous vectors. In this work, we discovered that dictionary…

Computation and Language · Computer Science 2021-03-16 Juexiao Zhang , Yubei Chen , Brian Cheung , Bruno A Olshausen

Probabilistic atlases provide essential spatial contextual information for image interpretation, Bayesian modeling, and algorithmic processing. Such atlases are typically constructed by grouping subjects with similar demographic…

Machine Learning · Computer Science 2018-06-07 Yuankai Huo , Katherine Swett , Susan M. Resnick , Laurie E. Cutting , Bennett A. Landman

Multiple-view (MV) visualization provides a comprehensive and integrated perspective on complex data, establishing itself as an effective method for visual communication and exploratory data analysis. While existing studies have…

Human-Computer Interaction · Computer Science 2025-11-17 Yihan Hou , Yilin Ye , Liangwei Wang , Huamin Qu , Wei Zeng

Factor analysis has been extensively used to reveal the dependence structures among multivariate variables, offering valuable insight in various fields. However, it cannot incorporate the spatial heterogeneity that is typically present in…

Methodology · Statistics 2024-11-14 Yanxiu Jin , Tomoya Wakayama , Renhe Jiang , Shonosuke Sugasawa

Biologists often perform clustering analysis to derive meaningful patterns, relationships, and structures from data instances and attributes. Though clustering plays a pivotal role in biologists' data exploration, it takes non-trivial…

Human-Computer Interaction · Computer Science 2019-11-05 Bahador Saket , Subhajit Das , Bum Chul Kwon , Alex Endert

Multidimensional scaling visualizes dissimilarities among objects and reduces data dimensionality. While many methods address symmetric proximity data, asymmetric and especially three-way proximity data (capturing relationships across…

Methodology · Statistics 2025-11-21 Aleix Alcacer , Rafael Benitez , Vicente J. Bolos , Irene Epifanio