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The network paradigm is increasingly used to describe the topology and dynamics of complex systems. Here we review the results of the topological analysis of protein structures as molecular networks describing their small-world character,…

Biomolecules · Quantitative Biology 2007-06-10 Csaba Bode , Istvan A. Kovacs , Mate S. Szalay , Robin Palotai , Tamas Korcsmaros , Peter Csermely

The changing topology of a network is driven by the need to maintain or optimize network function. As this function is often related to moving quantities such as traffic, information, etc. efficiently through the network the structure of…

Physics and Society · Physics 2023-11-28 Annika King , Dallas Smith , Benjamin Webb

Network reconstruction is the first step towards understanding, diagnosing and controlling the dynamics of complex networked systems. It allows us to infer properties of the interaction matrix, which characterizes how nodes in a system…

Systems and Control · Computer Science 2016-01-12 Marco Tulio Angulo , Jaime A. Moreno , Albert-László Barabási , Yang-Yu Liu

A dynamical network, a graph whose nodes are dynamical systems, is usually characterized by a large dimensional space which is not always accesible due to the impossibility of measuring all the variables spanning the state space. Therefore,…

Chaotic Dynamics · Physics 2019-07-25 Irene Sendiña-Nadal , Christophe Letellier

The discovery of community structure is a common challenge in the analysis of network data. Many methods have been proposed for finding community structure, but few have been proposed for determining whether the structure found is…

Data Analysis, Statistics and Probability · Physics 2008-04-29 Brian Karrer , Elizaveta Levina , M. E. J. Newman

Estimating influential nodes in large scale networks including but not limited to social networks, biological networks, communication networks, emerging smart grids etc. is a topic of fundamental interest. To understand influences of nodes…

Social and Information Networks · Computer Science 2014-06-13 Sima Das

The control of complex networks is of paramount importance in areas as diverse as ecosystem management, emergency response, and cell reprogramming. A fundamental property of networks is that perturbations to one node can affect other nodes,…

Disordered Systems and Neural Networks · Physics 2013-07-15 Sean P. Cornelius , William L. Kath , Adilson E. Motter

A reflection of our ultimate understanding of a complex system is our ability to control its behavior. Typically, control has multiple prerequisites: It requires an accurate map of the network that governs the interactions between the…

Systems and Control · Computer Science 2016-09-21 Yang-Yu Liu , Albert-Laszló Barabási

The network density matrix formalism allows for describing the dynamics of information on top of complex structures and it has been successfully used to analyze from system's robustness to perturbations to coarse graining multilayer…

Physics and Society · Physics 2023-05-03 Arsham Ghavasieh , Manlio De Domenico

The importance of structured, complex connectivity patterns found in several real-world systems is to a great extent related to their respective effects in constraining and even defining the respective dynamics. Yet, while complex networks…

Tissues and Organs · Quantitative Biology 2008-05-16 Matheus P. Viana , Bruno A. N. Travencolo , E. Tanck , Luciano da F. Costa

This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

Real-world complex systems exhibit multiple levels of relationships. In many cases, they require to be modeled by interconnected multilayer networks, characterizing interactions on several levels simultaneously. It is of crucial importance…

Physics and Society · Physics 2015-04-24 Manlio De Domenico , Albert Solé-Ribalta , Elisa Omodei , Sergio Gómez , Alex Arenas

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of…

Physics and Society · Physics 2018-01-18 Mor Nitzan , Jose Casadiego , Marc Timme

From the perspective of network analysis, the ubiquitous networks are comprised of regular and irregular components, which makes uncovering the complexity of network structures to be a fundamental challenge. Exploring the regular…

Social and Information Networks · Computer Science 2018-08-30 Tao Wu , Shaojie Qiao , Xingping Xian , Xi-Zhao Wang , Wei Wang , Yanbing Liu

Community identification of network components enables us to understand the mesoscale clustering structure of networks. A number of algorithms have been developed to determine the most likely community structures in networks. Such a…

Physics and Society · Physics 2019-08-20 Heetae Kim , Sang Hoon Lee

Many networks describing complex systems are directed: the interactions between elements are not symmetric. Recent work has shown that these networks can display properties such as trophic coherence or non-normality, which in turn affect…

Physics and Society · Physics 2019-08-21 Samuel Johnson

We explore the interplay of network structure, topology, and dynamic interactions between nodes using the paradigm of distributed synchronization in a network of coupled oscillators. As the network evolves to a global steady state,…

Disordered Systems and Neural Networks · Physics 2015-06-04 Kristina Lerman , Rumi Ghosh

A procedure to characterize chaotic dynamical systems with concepts of complex networks is pursued, in which a dynamical system is mapped onto a network. The nodes represent the regions of space visited by the system, while edges represent…

Statistical Mechanics · Physics 2011-12-20 Ernesto P. Borges , Daniel O. Cajueiro , Roberto F. S. Andrade

Classic measures of graph centrality capture distinct aspects of node importance, from the local (e.g., degree) to the global (e.g., closeness). Here we exploit the connection between diffusion and geometry to introduce a multiscale…

Physics and Society · Physics 2020-07-29 Alexis Arnaudon , Robert L. Peach , Mauricio Barahona
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