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Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…

Quantitative Methods · Quantitative Biology 2021-10-20 Xiong Liu , Greg L. Hersch , Iya Khalil , Murthy Devarakonda

Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…

Computation and Language · Computer Science 2024-03-28 Wenjun Kong , Yamei Xia

Machine question answering is an essential yet challenging task in natural language processing. Recently, Pre-trained Contextual Embeddings (PCE) models like Bidirectional Encoder Representations from Transformers (BERT) and A Lite BERT…

Computation and Language · Computer Science 2021-10-20 Shilun Li , Renee Li , Veronica Peng

Extracting relational triples from text is a crucial task for constructing knowledge bases. Recent advancements in joint entity and relation extraction models have demonstrated remarkable F1 scores ($\ge 90\%$) in accurately extracting…

Computation and Language · Computer Science 2023-10-30 Pratik Saini , Samiran Pal , Tapas Nayak , Indrajit Bhattacharya

Recent work has shown the surprising ability of multi-lingual BERT to serve as a zero-shot cross-lingual transfer model for a number of language processing tasks. We combine this finding with a similarly-recently proposal on sentence-level…

Information Retrieval · Computer Science 2019-11-11 Peng Shi , Jimmy Lin

Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant…

Computation and Language · Computer Science 2024-01-17 Mingjie Li , Karin Verspoor

We present a novel supervised word alignment method based on cross-language span prediction. We first formalize a word alignment problem as a collection of independent predictions from a token in the source sentence to a span in the target…

Computation and Language · Computer Science 2020-05-01 Masaaki Nagata , Chousa Katsuki , Masaaki Nishino

Traditionally, authorship attribution (AA) tasks relied on statistical data analysis and classification based on stylistic features extracted from texts. In recent years, pre-trained language models (PLMs) have attracted significant…

Computation and Language · Computer Science 2025-04-14 Taisei Kanda , Mingzhe Jin , Wataru Zaitsu

Domain adaptation or transfer learning using pre-trained language models such as BERT has proven to be an effective approach for many natural language processing tasks. In this work, we propose to formulate word sense disambiguation as a…

Computation and Language · Computer Science 2020-10-02 Boon Peng Yap , Andrew Koh , Eng Siong Chng

Pre-trained BERT models have achieved impressive accuracy on natural language processing (NLP) tasks. However, their excessive amount of parameters hinders them from efficient deployment on edge devices. Binarization of the BERT models can…

Computation and Language · Computer Science 2023-05-10 Jiayi Tian , Chao Fang , Haonan Wang , Zhongfeng Wang

Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a…

Computation and Language · Computer Science 2020-11-26 Walid Hafiane , Joel Legrand , Yannick Toussaint , Adrien Coulet

A large amount of information is stored in data tables. Users can search for data tables using a keyword-based query. A table is composed primarily of data values that are organized in rows and columns providing implicit structural…

Information Retrieval · Computer Science 2022-03-29 Mohamed Trabelsi , Zhiyu Chen , Shuo Zhang , Brian D. Davison , Jeff Heflin

In recent years, we have seen a colossal effort in pre-training multilingual text encoders using large-scale corpora in many languages to facilitate cross-lingual transfer learning. However, due to typological differences across languages,…

Computation and Language · Computer Science 2021-06-07 Wasi Uddin Ahmad , Haoran Li , Kai-Wei Chang , Yashar Mehdad

Multilingual BERT (mBERT) trained on 104 languages has shown surprisingly good cross-lingual performance on several NLP tasks, even without explicit cross-lingual signals. However, these evaluations have focused on cross-lingual transfer…

Computation and Language · Computer Science 2020-10-02 Shijie Wu , Mark Dredze

The success of bidirectional encoders using masked language models, such as BERT, on numerous natural language processing tasks has prompted researchers to attempt to incorporate these pre-trained models into neural machine translation…

Computation and Language · Computer Science 2021-09-13 Haoran Xu , Benjamin Van Durme , Kenton Murray

We examine the capabilities of a unified, multi-task framework for three information extraction tasks: named entity recognition, relation extraction, and event extraction. Our framework (called DyGIE++) accomplishes all tasks by…

Computation and Language · Computer Science 2019-09-11 David Wadden , Ulme Wennberg , Yi Luan , Hannaneh Hajishirzi

While large language models like BERT demonstrate strong empirical performance on semantic tasks, whether this reflects true conceptual competence or surface-level statistical association remains unclear. I investigate whether BERT encodes…

Computation and Language · Computer Science 2025-06-16 Cole Gawin

Financial named entity recognition (FinNER) from literature is a challenging task in the field of financial text information extraction, which aims to extract a large amount of financial knowledge from unstructured texts. It is widely…

Computation and Language · Computer Science 2022-06-01 Yuzhe Zhang , Hong Zhang

Entity linking, the task of mapping textual mentions to known entities, has recently been tackled using contextualized neural networks. We address the question whether these results -- reported for large, high-quality datasets such as…

Computation and Language · Computer Science 2020-05-20 Nadja Kurz , Felix Hamann , Adrian Ulges

Recently, there is an effort to extend fine-grained entity typing by using a richer and ultra-fine set of types, and labeling noun phrases including pronouns and nominal nouns instead of just named entity mentions. A key challenge for this…

Computation and Language · Computer Science 2021-06-09 Hongliang Dai , Yangqiu Song , Haixun Wang