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We report here a new entropic mechanism of protein thermostability due to residual dynamics of rotamer isomerization in native state. All-atom simulations show that Lysines have much greater number of accessible rotamers than Arginines in…

Biomolecules · Quantitative Biology 2015-06-26 Igor N. Berezovsky , William W. Chen , Paul J. Choi , Eugene I. Shakhnovich

During the growth of metal thin films on dielectric substrates at a given deposition temperature T, the film's morphology is conditioned by the magnitude and asymmetry of up- and downhill diffusion. Any severe change of this mechanism leads…

Mesoscale and Nanoscale Physics · Physics 2013-04-17 Henning Galinski , Thomas Ryll , Philipp Reibisch , Lukas Schlagenhauf , Iwan Schenker , Ludwig J. Gauckler

What characterises a solid is its way to respond to external stresses. Ordered solids, such crystals, display an elastic regime followed by a plastic one, both well understood microscopically in terms of lattice distortion and dislocations.…

Soft Condensed Matter · Physics 2016-12-21 Giulio Biroli , Pierfrancesco Urbani

Using molecular dynamics simulation we examine changeovers among crystal, glass, and liquid at high density in a two dimensional binary mixture. We change the ratio between the diameters of the two components and the temperature. The…

Soft Condensed Matter · Physics 2009-11-11 Toshiyuki Hamanaka , Akira Onuki

Colloidal particles are often seen as big atoms that can be directly observed in real space. They are therefore playing an increasingly important role as model systems to study processes of interest in condensed matter physics such as…

Molecular dynamic simulations were employed to study a water-like model confined between hydrophobic and hydrophilic plates. The phase behavior of this system is obtained for different distances between the plates and particle-plate…

Soft Condensed Matter · Physics 2015-06-17 Leandro B. Krott , Marcia C. Barbosa

A theoretical model for the effect of water hydrogen bonding on the thermodynamics of hydrophobic hydration is proposed as a combination of the classical density functional theory with the recently developed probabilistic approach to water…

Statistical Mechanics · Physics 2011-06-16 Yuri S. Djikaev

Fundamental Lagrangian, frozen-in and topological invariants can be useful to explain systematic connections between plasma parameters. At high plasma temperature the dissipation is small and the robust invariances are manifested. We invoke…

Plasma Physics · Physics 2016-08-24 Florin Spineanu , Madalina Vlad

The pressure driven Mott-transition in Chromium doped V2O3 films is investigated by direct electrical measurements on polycrystalline films with thicknesses down to 10 nm, and doping concentrations of 2%, 5% and 15%. A change in resistivity…

Strongly Correlated Electrons · Physics 2024-05-15 Johannes Mohr , Tyler Hennen , Daniel Bedau , Rainer Waser , Dirk J. Wouters

Crystals melt when thermal excitations or the concentration of defects in the lattice is sufficiently high. Upon melting, the crystalline long-range order vanishes, turning the solid to a fluid. In contrast to this classical scenario of…

Conventional gas-liquid phase transitions feature a coexistence line that has a monotonic and positive slope in line with our intuition that cooling always leads to condensation. Here we study the inverse phenomenon, condensation of…

Statistical Mechanics · Physics 2023-07-21 Joël A. K. L. Picard , T. Speck

In supercooled liquids, vitrification generally suppresses crystallization. Yet some glasses can still crystallize despite the arrest of diffusive motion. This ill-understood process may limit the stability of glasses, but its microscopic…

The microstructure of snow determines its fundamental properties such as the mechanical strength, reflectivity, or the thermo-hydraulic properties. Snow undergoes continuous microstructural changes due to local gradients in temperature,…

Fluid Dynamics · Physics 2024-08-01 Adrian Moure , Xiaojing Fu

Understanding the adsorption and physical characteristics of supported lipid membranes is crucial for their effective use as model cell membranes. Their morphological and thermodynamic properties at the nanoscale have traditionally been…

Soft Condensed Matter · Physics 2024-03-28 H. Read , S. Benaglia , L. Fumagalli

Amorphous solids, such as metallic, polymeric, and colloidal glasses, display complex spatiotemporal response to applied deformations. In contrast to crystalline solids, during loading, amorphous solids exhibit a smooth crossover from…

Soft Condensed Matter · Physics 2017-03-08 Meng Fan , Minglei Wang , Kai Zhang , Yanhui Liu , Jan Schroers , Mark D. Shattuck , Corey S. O'Hern

Despite its fundamental and technological importance, a microscopic understanding of the crystallization process is still elusive. By computer simulations of the hard-sphere model we reveal the mechanism by which thermal fluctuations drive…

Soft Condensed Matter · Physics 2012-06-29 John Russo , Hajime Tanaka

A spontaneous buckling transition in thin layers of monodomain nematic liquid crystalline gel was observed by polarized light microscopy. The coupling between the orientational ordering of liquid crystalline solvent and the translational…

Soft Condensed Matter · Physics 2009-10-20 Guangnan Meng , Robert B. Meyer

Structural rearrangement of polystyrene colloidal crystals under dry sintering conditions has been revealed by in situ grazing incidence X-ray scattering. Measured diffraction patterns were analysed using distorted wave Born approximation…

The proton dynamics of a 2D water monolayer confined inside a graphene slit pore is studied in Cartesian and molecular frames of reference using molecular dynamics simulations. The vibrational density of states of the proton was calculated…

Mesoscale and Nanoscale Physics · Physics 2021-09-24 Mohd Moid , Yacov Finkelstein , Raymond Moreh , Prabal K Maiti

We study the mechanics of temperature-driven reconstructive martensitic transformations in crystalline materials, within the framework of nonlinear elasticity theory. We focus on the prototypical case of the square-hexagonal transition in…

Materials Science · Physics 2025-05-23 Edoardo Arbib , Noemi Barrera , Paolo Biscari , Giovanni Zanzotto
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