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Biophysical models offer valuable insights into climate-phenology relationships in both natural and agricultural settings. However, there are substantial structural discrepancies across models which require site-specific recalibration,…

We apply deep metric learning for the first time to the problem of classifying planktic foraminifer shells on microscopic images. This species recognition task is an important information source and scientific pillar for reconstructing past…

Biodiversity monitoring is crucial for tracking and counteracting adverse trends in population fluctuations. However, automatic recognition systems are rarely applied so far, and experts evaluate the generated data masses manually.…

In the field of image-based drug discovery, capturing the phenotypic response of cells to various drug treatments and perturbations is a crucial step. However, existing methods require computationally extensive and complex multi-step…

Advancements in modern science have led to the increasing availability of non-Euclidean data in metric spaces. This paper addresses the challenge of modeling relationships between non-Euclidean responses and multivariate Euclidean…

In deep metric learning (DML), high-level input data are represented in a lower-level representation (embedding) space, such that samples from the same class are mapped close together, while samples from disparate classes are mapped further…

We propose an end-to-end deep learning framework that comprehensively solves the inverse wave scattering problem across all length scales. Our framework consists of the newly introduced wide-band butterfly network coupled with a simple…

Deep phenotyping study has become an emerging field to understand the gene function and the structure of biological networks. For the living animal C. elegans, recent advances in genome-editing tools, microfluidic devices and phenotypic…

Clustering is a fundamental approach to understanding data patterns, wherein the intuitive Euclidean distance space is commonly adopted. However, this is not the case for implicit cluster distributions reflected by qualitative attribute…

Deep embeddings answer one simple question: How similar are two images? Learning these embeddings is the bedrock of verification, zero-shot learning, and visual search. The most prominent approaches optimize a deep convolutional network…

Machine learning has been widely utilized in fluid mechanics studies and aerodynamic optimizations. However, most applications, especially flow field modeling and inverse design, involve two-dimensional flows and geometries. The…

Regression with non-Euclidean responses -- e.g., probability distributions, networks, symmetric positive-definite matrices, and compositions -- has become increasingly important in modern applications. In this paper, we propose deep…

Deep learning is the mainstream technique for many machine learning tasks, including image recognition, machine translation, speech recognition, and so on. It has outperformed conventional methods in various fields and achieved great…

Early diagnosis of plant diseases is critical for global food safety, yet most AI solutions lack the generalization required for real-world agricultural diversity. These models are typically constrained to specific species, failing to…

Analyzing high-dimensional data with manifold learning algorithms often requires searching for the nearest neighbors of all observations. This presents a computational bottleneck in statistical manifold learning when observations of…

3D data is a valuable asset the computer vision filed as it provides rich information about the full geometry of sensed objects and scenes. Recently, with the availability of both large 3D datasets and computational power, it is today…

This paper presents an evaluation of several approaches of plants species distribution modeling based on spatial, environmental and co-occurrences data using machine learning methods. In particular, we re-evaluate the environmental…

Given a directed graph, G=(V,E), a path query, path(u,v), returns whether there is a directed path from u to v in G, for u,v vertices in V. Given only V, exactly learning all the edges in G using path queries is often impossible, since path…

Typing methods are widely used in the surveillance of infectious diseases, outbreaks investigation and studies of the natural history of an infection. And their use is becoming standard, in particular with the introduction of High…

Data clustering, the task of grouping observations according to their similarity, is a key component of unsupervised learning -- with real world applications in diverse fields such as biology, medicine, and social science. Often in these…