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A phylogenetic variety is an algebraic variety parameterized by a statistical model of the evolution of biological sequences along a tree. Understanding this variety is an important problem in the area of algebraic statistics with…

Populations and Evolution · Quantitative Biology 2024-05-22 Luis David Garcia Puente , Marina Garrote-López , Elima Shehu

We present the first unsupervised deep learning method for pollen analysis using bright-field microscopy. Using a modest dataset of 650 images of pollen grains collected from honey, we achieve family level identification of pollen. We embed…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Chloe He , Gerard Glowacki , Alexis Gkantiragas

During developmental processes such as embryogenesis, how a group of cells fold into specific structures, is a central question in biology that defines how living organisms form. Establishing tissue-level morphology critically relies on how…

Soft Condensed Matter · Physics 2024-07-23 Haiqian Yang , Anh Q. Nguyen , Dapeng Bi , Markus J. Buehler , Ming Guo

Mastering fine-grained visual recognition, essential in many expert domains, can require that specialists undergo years of dedicated training. Modeling the progression of such expertize in humans remains challenging, and accurately…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Leonie Bossemeyer , Samuel Heinrich , Grant Van Horn , Oisin Mac Aodha

The evolution processes of complex systems carry key information in the systems' functional properties. Applying machine learning algorithms, we demonstrate that the historical formation process of various networked complex systems can be…

Physics and Society · Physics 2024-03-25 Junya Wang , Yi-Jiao Zhang , Cong Xu , Jiaze Li , Jiachen Sun , Jiarong Xie , Ling Feng , Tianshou Zhou , Yanqing Hu

The current neuron reconstruction pipeline for electron microscopy (EM) data usually includes automatic image segmentation followed by extensive human expert proofreading. In this work, we aim to reduce human workload by predicting…

Computer Vision and Pattern Recognition · Computer Science 2024-01-09 Qihua Chen , Xuejin Chen , Chenxuan Wang , Yixiong Liu , Zhiwei Xiong , Feng Wu

Symmetry is a key feature observed in nature (from flowers and leaves, to butterflies and birds) and in human-made objects (from paintings and sculptures, to manufactured objects and architectural design). Rotational, translational, and…

Computer Vision and Pattern Recognition · Computer Science 2019-08-28 Felice De Luca , Md Iqbal Hossain , Stephen Kobourov

For pattern recognition like image recognition, it has become clear that each machine-learning dictionary data actually became data in probability space belonging to Euclidean space. However, the distances in the Euclidean space and the…

Artificial Intelligence · Computer Science 2018-01-09 Zecang Gu , Ling Dong

Many scientific fields study data with an underlying structure that is a non-Euclidean space. Some examples include social networks in computational social sciences, sensor networks in communications, functional networks in brain imaging,…

Computer Vision and Pattern Recognition · Computer Science 2017-08-02 Michael M. Bronstein , Joan Bruna , Yann LeCun , Arthur Szlam , Pierre Vandergheynst

Symmetry is a fundamental tool in the exploration of a broad range of complex systems. In machine learning symmetry has been explored in both models and data. In this paper we seek to connect the symmetries arising from the architecture of…

Machine Learning · Computer Science 2023-03-27 Charles Godfrey , Davis Brown , Tegan Emerson , Henry Kvinge

Populations of isogenic embryonic stem cells or clonal bacteria often exhibit extensive phenotypic heterogeneity which arises from stochastic intrinsic dynamics of cells. The internal state of the cell can be transmitted epigenetically in…

Populations and Evolution · Quantitative Biology 2016-02-17 Sahand Hormoz , Nicolas Desprat , Boris I. Shraiman

Many metric learning tasks, such as triplet learning, nearest neighbor retrieval, and visualization, are treated primarily as embedding tasks where the ultimate metric is some variant of the Euclidean distance (e.g., cosine or Mahalanobis),…

Machine Learning · Computer Science 2023-11-22 Fred Lu , Edward Raff , Francis Ferraro

Machine learning has been widely applied to clearly defined problems of astronomy and astrophysics. However, deep learning and its conceptual differences to classical machine learning have been largely overlooked in these fields. The broad…

Instrumentation and Methods for Astrophysics · Physics 2024-10-15 Nima Sedaghat , Martino Romaniello , Jonathan E. Carrick , François-Xavier Pineau

The elucidation upon fly's neuronal patterns as a link to computer graphics and memory cards I/O's, is investigated for the phenomenon by propounding a unified theory of Einstein's two known relativities. It is conclusive that flies could…

Computational Engineering, Finance, and Science · Computer Science 2009-12-05 Philip B. Alipour

The development of new treatments often requires clinical trials with translational animal models using (pre)-clinical imaging to characterize inter-species pathological processes. Deep Learning (DL) models are commonly used to automate…

Image and Video Processing · Electrical Eng. & Systems 2022-03-04 Pedro M. Gordaliza , Juan José Vaquero , Arrate Muñoz-Barrutia

Beam selection for millimeter-wave links in a vehicular scenario is a challenging problem, as an exhaustive search among all candidate beam pairs cannot be assuredly completed within short contact times. We solve this problem via a novel…

Biophilia is an innate love for living things and nature itself that has been associated with a positive impact on mental health and well-being. This study explores the application of deep learning methods for the classification of…

Computer Vision and Pattern Recognition · Computer Science 2024-03-11 Purna Kar , Jordan J. Bird , Yangang Xing , Alexander Sumich , Andrew Knight , Ahmad Lotfi , Benedict Carpenter van Barthold

A core challenge in the interpretation of deep neural networks is identifying commonalities between the underlying algorithms implemented by distinct networks trained for the same task. Motivated by this problem, we introduce DYNAMO, an…

Machine Learning · Computer Science 2023-03-01 Jordan Cotler , Kai Sheng Tai , Felipe Hernández , Blake Elias , David Sussillo

In this paper we propose a Deep Learning architecture to approximate diffeomorphisms diffeotopic to the identity. We consider a control system of the form $\dot x = \sum_{i=1}^lF_i(x)u_i$, with linear dependence in the controls, and we use…

Optimization and Control · Mathematics 2023-11-20 Alessandro Scagliotti

Deep learning based on deep neural networks of various structures and architectures has been powerful in many practical applications, but it lacks enough theoretical verifications. In this paper, we consider a family of deep convolutional…

Machine Learning · Computer Science 2020-07-29 Zhiying Fang , Han Feng , Shuo Huang , Ding-Xuan Zhou
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