Related papers: Cyclic Oritatami Systems Cannot Fold Infinite Frac…
We study a branching-process random iterated function system (RIFS) defined by a recursive replacement of leaves by finite subtrees at strictly smaller contraction scales. This construction yields a tree-valued, infinite-depth random…
Ligands are the key to almost any strategy in the assembly of programmable nanocrystals (or nanoparticles) and must be accurately considered in any predictive model. Hard Spheres (or Shapes) provide the simplest and yet quite successful…
Current models for the folding of the human genome see a hierarchy stretching down from chromosome territories, through A/B compartments and TADs (topologically-associating domains), to contact domains stabilized by cohesin and CTCF.…
We develop a general theory of crystal truncation rod (CTR) scattering from vicinal surfaces with a coherently strained heteroepitaxial film. The formalism incorporates film-induced interference fringes, full elastic lattice distortion,…
Fractal behaviour, i.e. scale invariance in spatio-temporal dynamics, have been found to describe and model many systems in nature, in particular fluid mechanics and geophysical related geometrical objects, like the convective boundary…
We show that a quantum scar state, an atypical eigenstate breaking eigenstate thermalization hypothesis embedded in a many-body energy spectrum, can be constructed in flat band systems. The key idea of our construction is to make use of…
A curious feature of organ and organoid morphogenesis is that in certain cases, spatial oscillations in the thickness of the growing "film" are out-of-phase with the deformation of the slower-growing "substrate," while in other cases, the…
A new Essentially Non-oscillatory (ENO) recovery algorithm is developed and tested in a Finite Volume method. The construction is hinged on a reformulation of the reconstruction as the solution to a variational problem. The sign property of…
As the complexity and heterogeneity of a system grows, the challenge of specifying, documenting and synthesizing correct, machine-readable designs increases dramatically. Separation of the system into manageable parts is needed to support…
Optical coherence tomography (OCT) is a volumetric imaging modality that empowers clinicians and scientists to noninvasively visualize the cross-sections of biological samples. As the latest generation of its kind, Fourier-domain OCT…
We present a panoramic view of the utility of coarse-grained (CG) models to study folding and functions of proteins and RNA. Drawing largely on the methods developed in our group over the last twenty years, we describe a number of key…
The fractionalization of global symmetry charges is a striking hallmark of topological quantum order. Here, we discuss the fractionalization of subsystem symmetries in two-dimensional topological phases. In line with previous no-go…
DNA self-assembly is an important tool that has a wide range of applications such as building nanostructures, the transport of target virotherapies, and nano-circuitry. Tools from graph theory can be used to encode the biological process of…
In this paper we study the anti-integrable limit scenario of skew-product systems. We consider a generalization of such systems based on the Frenkel-Kontorova model, and prove the existence of orbits with any fibered rotation number in…
We study the kinetics of random sequential adsorption of a mixture of particles with continuous distribution of sizes for different deposition rules. It appears in the long time limit the resulting system can be described using the fractal…
We study the computational complexity of approximately computing the partition function of a spin system. Techniques based on standard counting-to-sampling reductions yield $\tilde{O}(n^2)$-time algorithms, where $n$ is the size of the…
We demonstrate existence of a tile assembly system that self-assembles the statistically self-similar Sierpinski Triangle in the Winfree-Rothemund Tile Assembly Model. This appears to be the first paper that considers self-assembly of a…
A system is in a self-organized critical state if the distribution of some measured events (avalanche sizes, for instance) obeys a power law for as many decades as it is possible to calculate or measure. The finite-size scaling of this…
For fixed natural numbers $r$ and $s$, where $2\leq s \leq r$, we consider a representation of numbers from the interval $[0;\frac{r}{s-1}]$ obtained by encoding numbers by means of the alphabet $A=\{0,1,...,r\}$ via the expansion…
The Discrete Fourier Transform (DFT) underpins the solution to many inverse problems commonly possessing missing or un-measured frequency information. This incomplete coverage of Fourier space always produces systematic artefacts called…