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The computational complexity of the isomorphism problem for regular trees, regular linear orders, and regular words is analyzed. A tree is regular if it is isomorphic to the prefix order on a regular language. In case regular languages are…
This paper provides a geometric characterization of subclasses of the regular languages. We use finite model theory to characterize objects like strings and trees as relational structures. Logical statements meeting certain criteria over…
The occurrence and the distribution of patterns of trees associated to natural numbers are investigated. Bounds from above and below are proven for certain natural quantities.
In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…
Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…
In this paper, we study tree--like tableaux and some of their probabilistic properties. Tree--like tableaux are in bijection with other combinatorial structures, including permutation tableaux, and have a connection to the partially…
Nested parentheses are forms in an algebra which define orders of evaluations. A class of well-formed sets of associated opening and closing parentheses is well studied in conjunction with Dyck paths and Catalan numbers. Nested parentheses…
Given a tree of weighted vertices, it is sometimes possible to break the tree into two equally-weighted subtrees within an allowable error. We give a fast algorithm that finds an edge which breaks the tree into equal-weight components or…
A $k$-plane tree is a plane tree whose vertices are assigned labels between $1$ and $k$ in such a way that the sum of the labels along any edge is no greater than $k+1$. These trees are known to be related to $(k+1)$-ary trees, and they are…
It is proved that the restriction of a $k$ and $(k-1)$-component directed spanning forest of minimal weight to an atom of the subset algebra generated by the sets of vertices of trees of $k$-component minimal spanning forests is a tree. For…
The relationship between two important problems in tree pattern matching, the largest common subtree and the smallest common supertree problems, is established by means of simple constructions, which allow one to obtain a largest common…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…
A congruence of the weak order is simple if its quotientope is a simple polytope. We provide an alternative elementary proof of the characterization of the simple congruences in terms of forbidden up and down arcs. For this, we provide a…
Given a graph, we can form a spanning forest by first sorting the edges in some order, and then only keep edges incident to a vertex which is not incident to any previous edge. The resulting forest is dependent on the ordering of the edges,…
With XML becoming an ubiquitous language for data interoperability purposes in various domains, efficiently querying XML data is a critical issue. This has lead to the design of algebraic frameworks based on tree-shaped patterns akin to the…
This paper considers the enumeration of ternary trees (i.e. rooted ordered trees in which each vertex has 0 or 3 children) avoiding a contiguous ternary tree pattern. We begin by finding recurrence relations for several simple tree…
We study the design of efficient algorithms for combinatorial pattern matching. More concretely, we study algorithms for tree matching, string matching, and string matching in compressed texts.
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…
We study multicolour, oriented and high-dimensional discrepancies of the set of all subtrees of a tree. As our main result, we show that the $r$-colour discrepancy of the subtrees of any tree is a linear function of the number of leaves…