Related papers: Coded trace reconstruction in a constant number of…
We consider rate R = k/n causal linear codes that map a sequence of k-dimensional binary vectors {b_t} to a sequence of n-dimensional binary vectors {c_t}, such that each c_t is a function of {b_1,b_2,...,b_t}. Such a code is called anytime…
Motivated by the sequence reconstruction problem from traces in DNA-based storage, we consider the problem of designing codes for the deletion channel when multiple observations (or traces) are available to the decoder. We propose simple…
A locally recoverable code is an error-correcting code such that any erasure in a single coordinate of a codeword can be recovered from a small subset of other coordinates. In this article we develop an algorithm that computes a recovery…
We consider codes over fixed alphabets against worst-case symbol deletions. For any fixed $k \ge 2$, we construct a family of codes over alphabet of size $k$ with positive rate, which allow efficient recovery from a worst-case deletion…
We consider the problem of reconstructing an undirected graph $G$ on $n$ vertices given multiple random noisy subgraphs or "traces". Specifically, a trace is generated by sampling each vertex with probability $p_v$, then taking the…
We study the problem of learning a node-labeled tree given independent traces from an appropriately defined deletion channel. This problem, tree trace reconstruction, generalizes string trace reconstruction, which corresponds to the tree…
A family of error-correcting codes is list-decodable from error fraction $p$ if, for every code in the family, the number of codewords in any Hamming ball of fractional radius $p$ is less than some integer $L$ that is independent of the…
In this work, we construct the first locally-correctable codes (LCCs), and locally-testable codes (LTCs) with constant rate, constant relative distance, and sub-polynomial query complexity. Specifically, we show that there exist binary LCCs…
This work gives an explicit construction of a family of error correcting codes for the binary deletion channel and for the Poisson repeat channel. In the binary deletion channel with parameter $p$ (BDC$_p$) every bit is deleted…
The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…
The population recovery problem asks one to recover an unknown distribution over $n$-bit strings given access to independent noisy samples of strings drawn from the distribution. Recently, Ban et al. [BCF+19] studied the problem where the…
In this paper, we investigate binary reconstruction codes capable of correcting one deletion and one substitution. We define the \emph{single-deletion single-substitution ball} function $ \mathcal{B} $ as a mapping from a sequence to the…
We consider explicit polar constructions of blocklength $n\rightarrow\infty$ for the two extreme cases of code rates $R\rightarrow1$ and $R\rightarrow0.$ For code rates $R\rightarrow1,$ we design codes with complexity order of $n\log n$ in…
Distributed storage systems for large-scale applications typically use replication for reliability. Recently, erasure codes were used to reduce the large storage overhead, while increasing data reliability. A main limitation of…
We investigate the problem of encoding data into an $(n, t)$-break-resilient code ($(n, t)$-BRC), i.e., a collections of sequences of length~$n$ from which the original data can be reconstructed even if they are adversarially broken at up…
We consider the locally repairable codes (LRC), aiming at sequential recovering multiple erasures. We define the (n,k,r,t)-SLRC (Sequential Locally Repairable Codes) as an [n,k] linear code where any t'(>= t) erasures can be sequentially…
In this paper we give constructions for infinite sequences of finite non-linear locally recoverable codes $\mathcal C\subseteq \prod\limits^N_{i=1}\mathbb F_{q_i}$ over a product of finite fields arising from basis expansions in algebraic…
The problem of reconstructing strings from their substring spectra has a long history and in its most simple incarnation asks for determining under which conditions the spectrum uniquely determines the string. We study the problem of coded…
Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…
The sequence reconstruction problem, introduced by Levenshtein in 2001, considers a communication scenario where the sender transmits a codeword from some codebook and the receiver obtains multiple noisy reads of the codeword. The common…