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A double-stranded DNA unravels thermally through intermediate denatured bubble segments. Intrinsically, fluctuations ensue at the bubble boundaries from non-equilibrium (NE) energy exchanges with the environment. However, such details gets…

Soft Condensed Matter · Physics 2018-09-21 Keren Jiang , Faheem Khan , Javix Thomas , Arindam Phani , Thomas Thundat

We present a general computational scheme based on molecular dynamics (m.d.) simulation for calculating the chemical potential of adsorbed molecules in thermal equilibrium on the surface of a material. The scheme is based on the calculation…

Statistical Mechanics · Physics 2009-11-13 D. Alfe` , M. J. Gillan

Due to particle conservation, Canonical Molecular Dynamics (MD) simulations fail in the description of surface phase transitions involving coverage or lateral density changes. However, a step on the surface can act effectively as a source…

Materials Science · Physics 2016-08-31 D. Passerone , U. Tartaglino , F. Ercolessi , E. Tosatti

We study geometric and energetic factors that partake in modifying properties of polymeric melts via inserting well-dispersed nanoscopic particles (NP). Model systems are polybutadiene melts including 10-150 atom atomic clusters (0.1-1.5%…

Soft Condensed Matter · Physics 2015-06-05 Canan Atilgan , Ibrahim Inanc , Ali Rana Atilgan

Accurate estimate of nucleation rate is crucial for the study of ice nucleation and ice-promoting/anti-freeze strategies. Within the framework of Classical Nucleation Theory (CNT), the estimate of ice nucleation rate is very sensitive to…

Soft Condensed Matter · Physics 2021-07-07 Chaohong Wang , Hao Wang , Jianyang Wu , Zhisen Zhang

A new method to calculate cross sections for $(p,pn)$ and $(p,2p)$ reactions measured under inverse kinematics conditions is proposed. The method uses the prior form of the scattering transition amplitude, and replaces the exact three-body…

Nuclear Theory · Physics 2015-10-28 Antonio M. Moro

We discuss the status of thermal model descriptions of particle ratios in central nucleus-nucleus collisions at ultra-relativistic energy. An alternative to the ``Cleymans-Redlich'' interpretation of the freeze-out trajectory is given in…

Nuclear Theory · Physics 2016-09-08 P. Braun-Munzinger , J. Stachel

Nuclear $\beta$ spectrum and the corresponding (anti-)neutrino spectrum play important roles in many aspects of nuclear astrophysics, particle physics, nuclear industry and nuclear data. In this work we propose a projected shell model (PSM)…

Nuclear Theory · Physics 2023-08-23 Fan Gao , Zi-Rui Chen , Long-Jun Wang

A theoretical study of the variation of thermodynamic and transport properties of calamitic liquid crystals across the isotropic-nematic phase transition is carried out by calculating the {\it wavenumber (k) and time (t)} dependent…

Soft Condensed Matter · Physics 2008-02-18 Prasanth P. Jose , Biman Bagchi

Heat-based cancer treatment, so-called hyperthermia, can be used to destroy tumour cells directly or to make them more susceptible to chemotherapy or radiation therapy. To apply heat locally, iron oxide nanoparticles are injected into the…

Computational Engineering, Finance, and Science · Computer Science 2025-02-04 Barbara Wirthl , Paolo Decuzzi , Bernhard A. Schrefler , Wolfgang A. Wall

The modeling and simulation of heat source trajectories through phase-change materials is a relevant problem both for space exploration and for terrestrial climate research, among other fields. In space, the DLR and NASA are both interested…

Computational Engineering, Finance, and Science · Computer Science 2019-09-20 Alexander Gary Zimmerman

Heterogeneous catalysts consisting of supported metallic nanoparticles typically derive exceptional catalytic activity from their large proportion of under-coordinated surface sites which promote adsorption of reactant molecules.…

Materials Science · Physics 2022-10-03 James P. Horwath , Colin Lehman-Chong , Aleksandra Vojvodic , Eric A. Stach

We present the development and applications of a quadratic Spectral Neighbor Analysis Potential (q-SNAP) for ferromagnetic cobalt. Trained on Density Functional Theory calculations using the Perdew-Burke-Ernzerhof (DFT-PBE) functional, this…

Materials Science · Physics 2024-11-05 Marthe Bideault , Jérôme Creuze , Ryoji Asahi , Erich Wimmer

Atomic diffusion is usually understood as a succession of random, independent displacements of an adatom over the surface's potential energy landscape. Nevertheless, an analysis of Molecular Dynamics simulations of self-diffusion on Cu(111)…

Other Condensed Matter · Physics 2016-08-16 J. Ferrón , L. Gómez , J. J. de Miguel , R. Miranda

The melting point of a material constitutes a pivotal property with profound implications across various disciplines of science, engineering, and technology. Recent advancements in machine learning potentials have revolutionized the field,…

Materials Science · Physics 2024-09-02 Fu-Zhi Dai , Si-Hao Yuan , Yan-Bo Hao , Xin-Fu Gu , Shipeng Zhu , Jidong Hu , Yifen Xu

The electron component of an ultracold neutral plasma (UCP) is modeled based on a scalable method using a self-consistently determined mean-field approximation. Representative sampling of discrete electrons within the UCP are used to…

Plasma Physics · Physics 2016-02-17 John Guthrie , Jacob Roberts

The recently proposed strategy for studying the equilibrium thermodynamics of the glass phase using a molecular liquid is reviewed and tested in details on the solvable case of the $p$-spin model. We derive the general phase diagram, and…

Condensed Matter · Physics 2015-06-25 Marc Mezard

In the present paper, using a molecular dynamics simulation, we study a nature of melting of a two-dimensional ($2D$) system of classical particles interacting through a purely repulsive isotropic core-softened potential which is used for…

Soft Condensed Matter · Physics 2015-06-22 D. E. Dudalov , Yu. D. Fomin , E. N. Tsiok , V. N. Ryzhov

The scaled particle theory is developed for the description of thermodynamical properties of a mixture of hard spheres and hard spherocylinders. Analytical expressions for free energy, pressure and chemical potentials are derived. From the…

Soft Condensed Matter · Physics 2017-12-15 M. F. Holovko , M. V. Hvozd

In this paper, we have studied the energy spectra and B(E2) transition probabilities of 124-130Ba isotopes in the shape phase transition region between the spherical and gamma unstable deformed shapes. We have used a transitional…

Nuclear Theory · Physics 2016-11-23 H. Sabri , M. Seidi