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In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…

Quantitative Methods · Quantitative Biology 2022-10-18 August George , Doo Nam Kim , Trevor Moser , Ian T. Gildea , James E. Evans , Margaret S. Cheung

We introduce and analyze a new technique for model reduction for deep neural networks. While large networks are theoretically capable of learning arbitrarily complex models, overfitting and model redundancy negatively affects the prediction…

Machine Learning · Computer Science 2017-11-27 Alireza Aghasi , Afshin Abdi , Nam Nguyen , Justin Romberg

A weighted directed network (WDN) is a directed graph in which each edge is associated to a unique value called weight. These networks are very suitable for modeling real-world social networks in which there is an assessment of one vertex…

Social and Information Networks · Computer Science 2020-10-01 Dong Quan Ngoc Nguyen , Lin Xing , Lizhen Lin

Real-time analysis of graphs containing temporal information, such as social media streams, Q&A networks, and cyber data sources, plays an important role in various applications. Among them, detecting patterns is one of the fundamental…

Databases · Computer Science 2023-12-19 Seunghwan Min , Jihoon Jang , Kunsoo Park , Dora Giammarresi , Giuseppe F. Italiano , Wook-Shin Han

In this paper, we consider the problem of distributed inference in tree based networks. In the framework considered in this paper, distributed nodes make a 1-bit local decision regarding a phenomenon before sending it to the fusion center…

Information Theory · Computer Science 2016-11-17 Bhavya Kailkhura , Aditya Vempaty , Pramod K. Varshney

Graph embedding methods embed the nodes in a graph in low dimensional vector space while preserving graph topology to carry out the downstream tasks such as link prediction, node recommendation and clustering. These tasks depend on a…

Machine Learning · Computer Science 2020-10-22 Ramanujam Madhavan , Mohit Wadhwa

Network topology plays a key role in many phenomena, from the spreading of diseases to that of financial crises. Whenever the whole structure of a network is unknown, one must resort to reconstruction methods that identify the least biased…

Data Analysis, Statistics and Probability · Physics 2015-06-09 Rossana Mastrandrea , Tiziano Squartini , Giorgio Fagiolo , Diego Garlaschelli

Which one is better between two representative graph summarization models with and without edge weights? From web graphs to online social networks, large graphs are everywhere. Graph summarization, which is an effective graph compression…

Databases · Computer Science 2022-05-09 Shinhwan Kang , Kyuhan Lee , Kijung Shin

Many applications collect a large number of time series, for example, the financial data of companies quoted in a stock exchange, the health care data of all patients that visit the emergency room of a hospital, or the temperature sequences…

Information Theory · Computer Science 2017-02-09 Jonathan Mei , José M. F. Moura

Graph clustering aims to partition nodes into distinct clusters based on their similarity, thereby revealing relationships among nodes. Nevertheless, most existing methods do not fully utilize these edge weights. Leveraging edge weights in…

Machine Learning · Computer Science 2026-02-03 Haobing Liu , Yinuo Zhang , Tingting Wang , Ruobing Jiang , Yanwei Yu

Two problems in the search of metric characteristics on weighted undirected graphs with non-negative edge weights are being considered. The first problem: a weighted undirected graph with non-negative edge weight is given. The radius,…

Data Structures and Algorithms · Computer Science 2012-09-24 Airat Urakov , Timofey Timeryaev

Many computational problems admit fast algorithms on special inputs, however, the required properties might be quite restrictive. E.g., many graph problems can be solved much faster on interval or cographs, or on graphs of small…

Data Structures and Algorithms · Computer Science 2022-09-30 Stefan Kratsch , Florian Nelles

The shortest path problem in graphs is fundamental to AI. Nearly all variants of the problem and relevant algorithms that solve them ignore edge-weight computation time and its common relation to weight uncertainty. This implies that taking…

Data Structures and Algorithms · Computer Science 2024-03-29 Eyal Weiss , Ariel Felner , Gal A. Kaminka

We study network loss tomography based on observing average loss rates over a set of paths forming a tree -- a severely underdetermined linear problem for the unknown link loss probabilities. We examine in detail the role of sparsity as a…

Networking and Internet Architecture · Computer Science 2015-03-19 Vijay Arya , Darryl Veitch

Due to its broad applications in practice, the minimum spanning tree problem and its all kinds of variations have been studied extensively during the last decades, for which a host of efficient exact and heuristic algorithms have been…

Optimization and Control · Mathematics 2026-05-05 Yang Xu , Lianmin Zhang

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

With the impressive growth of network models in practically every scientific and technological area, we are often faced with the need to compare graphs, i.e., to quantify their (dis)similarity using appropriate metrics. This is necessary,…

Social and Information Networks · Computer Science 2025-07-03 Carlo Piccardi

Pairwise compatibility graphs (PCGs) with non-negative integer edge weights recently have been used to describe rare evolutionary events and scenarios with horizontal gene transfer. Here we consider the case that vertices are separated by…

Combinatorics · Mathematics 2020-05-26 Yangjing Long , Peter F. Stadler

Network (or graph) sparsification compresses a graph by removing inessential edges. By reducing the data volume, it accelerates or even facilitates many downstream analyses. Still, the accuracy of many sparsification methods, with…

Social and Information Networks · Computer Science 2023-09-28 Zhen Su , Jürgen Kurths , Henning Meyerhenke

Weight pruning is an effective model compression technique to tackle the challenges of achieving real-time deep neural network (DNN) inference on mobile devices. However, prior pruning schemes have limited application scenarios due to…

Machine Learning · Computer Science 2022-03-29 Yifan Gong , Geng Yuan , Zheng Zhan , Wei Niu , Zhengang Li , Pu Zhao , Yuxuan Cai , Sijia Liu , Bin Ren , Xue Lin , Xulong Tang , Yanzhi Wang
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