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Gene expression datasets offer insights into gene regulation mechanisms, biochemical pathways, and cellular functions. Additionally, comparing gene expression profiles between disease and control patients can deepen the understanding of…

Machine Learning · Computer Science 2025-03-27 Rita T. Sousa , Heiko Paulheim

A variety of knowledge graph embedding approaches have been developed. Most of them obtain embeddings by learning the structure of the knowledge graph within a link prediction setting. As a result, the embeddings reflect only the structure…

Artificial Intelligence · Computer Science 2024-07-08 N'Dah Jean Kouagou , Caglar Demir , Hamada M. Zahera , Adrian Wilke , Stefan Heindorf , Jiayi Li , Axel-Cyrille Ngonga Ngomo

Whilst there has been growing progress in Entity Linking (EL) for general language, existing datasets fail to address the complex nature of health terminology in layman's language. Meanwhile, there is a growing need for applications that…

Computation and Language · Computer Science 2020-10-09 Marco Basaldella , Fangyu Liu , Ehsan Shareghi , Nigel Collier

Text mining and information extraction for the medical domain has focused on scientific text generated by researchers. However, their direct access to individual patient experiences or patient-doctor interactions can be limited. Information…

Computation and Language · Computer Science 2022-04-22 Amelie Wührl , Roman Klinger

Graph data structures are widely used to store relational information between several entities. With data being generated worldwide on a large scale, we see a significant growth in the generation of knowledge graphs. Thing in the future is…

Artificial Intelligence · Computer Science 2023-10-24 Rohith Teja Mittakola , Thomas Hassan

Distance based knowledge graph embedding methods show promising results on link prediction task, on which two topics have been widely studied: one is the ability to handle complex relations, such as N-to-1, 1-to-N and N-to-N, the other is…

Computation and Language · Computer Science 2021-05-19 Linlin Chao , Jianshan He , Taifeng Wang , Wei Chu

Social world knowledge is a key ingredient in effective communication and information processing by humans and machines alike. As of today, there exist many knowledge bases that represent factual world knowledge. Yet, there is no resource…

Artificial Intelligence · Computer Science 2023-07-19 Nir Lotan , Einat Minkov

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

In the field of medicine and healthcare, the utilization of medical expertise, based on medical knowledge combined with patients' health information is a life-critical challenge for patients and health professionals. The within-laying…

Artificial Intelligence · Computer Science 2025-10-13 Mubaris Nadeem , Madjid Fathi

We present a new unified graph-based representation of medical data, combining genetic information and medical records of patients with medical knowledge via a unique knowledge graph. This approach allows us to infer meaningful information…

Artificial Intelligence · Computer Science 2024-10-22 Davide Belluomo , Tiziana Calamoneri , Giacomo Paesani , Ivano Salvo

The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven,…

This paper proposes an algorithm named as PrTransH to learn embedding vectors from real world EMR data based medical knowledge. The unique challenge in embedding medical knowledge graph from real world EMR data is that the uncertainty of…

Artificial Intelligence · Computer Science 2020-11-10 Linfeng Li , Peng Wang , Yao Wang , Jinpeng Jiang , Buzhou Tang , Jun Yan , Shenghui Wang , Yuting Liu

Knowledge graph embedding (KGE) is an increasingly popular technique that aims to represent entities and relations of knowledge graphs into low-dimensional semantic spaces for a wide spectrum of applications such as link prediction,…

Machine Learning · Computer Science 2023-10-17 Jiahang Cao , Jinyuan Fang , Zaiqiao Meng , Shangsong Liang

Knowledge Graphs are an emerging form of knowledge representation. While Google coined the term Knowledge Graph first and promoted it as a means to improve their search results, they are used in many applications today. In a knowledge…

Artificial Intelligence · Computer Science 2020-03-13 Nicolas Heist , Sven Hertling , Daniel Ringler , Heiko Paulheim

The rash development of knowledge graph research has brought big driving force to its application in many areas, including the medicine and healthcare domain. However, we have found that the application of some major information processing…

Artificial Intelligence · Computer Science 2026-01-23 Chuanqing Wang , Zhenmin Zhao , Shanshan Du , Chaoqun Fei , Songmao Zhang , Ruqian Lu

A key challenge in social network analysis is understanding the position, or stance, of people in the graph on a large set of topics. While past work has modeled (dis)agreement in social networks using signed graphs, these approaches have…

Social and Information Networks · Computer Science 2022-12-16 John Pougué-Biyong , Akshay Gupta , Aria Haghighi , Ahmed El-Kishky

The COVID-19 pandemic requires a fast response from researchers to help address biological, medical and public health issues to minimize its impact. In this rapidly evolving context, scholars, professionals and the public may need to…

Digital Libraries · Computer Science 2020-04-23 Kayvan Kousha , Mike Thelwall

Social media technologies are increasingly utilized by patients, leading to development of online social groups where patients share experiences and offer support to their peers on these platforms. There is limited research investigating…

Computers and Society · Computer Science 2016-06-07 Nwakego Isika , Antonette Mendoza , Rachelle Bosua

In this work, we demonstrate a novel system, namely Web of Scholars, which integrates state-of-the-art mining techniques to search, mine, and visualize complex networks behind scholars in the field of Computer Science. Relying on the…

Digital Libraries · Computer Science 2022-02-24 Jiaying Liu , Jing Ren , Wenqing Zheng , Lianhua Chi , Ivan Lee , Feng Xia

A set of 1.4 million biomedical papers was analyzed with regards to how often articles are mentioned on Twitter or saved by users on Mendeley. While Twitter is a microblogging platform used by a general audience to distribute information,…

Digital Libraries · Computer Science 2014-10-03 Stefanie Haustein , Vincent Larivière , Mike Thelwall , Didier Amyot , Isabella Peters