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The introduction of non-native organisms into complex microbiome communities holds enormous potential to benefit society. However, microbiome engineering faces several challenges including successful establishment of the organism into the…

Statistical averaging and asynchronous population dynamics as portfolio mechanisms are considered as the most important processes with which biodiversity contributes to ecosystem stability. However, portfolio theories usually regard…

Populations and Evolution · Quantitative Biology 2022-02-17 Chun-Wei Chang , Chih-hao Hsieh , Takeshi Miki

Ecological communities are composed of species interactions that respond to environmental fluctuations. Despite increasing evidence of temporal variation in these interactions, most theoretical frameworks remain rooted in static…

Feedbacks between evolution and ecology are ubiquitous, with ecological interactions determining which mutants are successful, and these mutants in turn modifying community structure. We study the evolutionary dynamics of several ecological…

Populations and Evolution · Quantitative Biology 2024-11-27 Aditya Mahadevan , Daniel S. Fisher

Nested structure, which is non-random, controls cooperation dynamics and biodiversity in plant-animal mutualistic networks. This structural pattern has been explained in a static (non-growth) network models. However, evolutionary processes…

Populations and Evolution · Quantitative Biology 2015-03-19 Kazuhiro Takemoto , Masanori Arita

The spatial dispersal of individuals is known to play an important role in the dynamics of populations, and is central to metapopulation theory. At the same time, local adaptation to environmental conditions creates a geographic mosaic of…

Populations and Evolution · Quantitative Biology 2017-09-25 Justin D. Yeakel , Jean P. Gibert , Peter A. H. Westley , Jonathan W. Moore

Understanding the behaviors of ecological systems is challenging given their multi-faceted complexity. To proceed, theoretical models such as Lotka-Volterra dynamics with random interactions have been investigated by the dynamical…

Biological Physics · Physics 2024-11-13 Jong Il Park , Deok-Sun Lee , Sang Hoon Lee , Hye Jin Park

Population structure induced by both spatial embedding and more general networks of interaction, such as model social networks, have been shown to have a fundamental effect on the dynamics and outcome of evolutionary games. These effects…

Populations and Evolution · Quantitative Biology 2009-11-13 Gergely J Szollosi , Imre Derenyi

Our planet is experiencing an accelerated process of change associated to a variety of anthropogenic phenomena. The future of this transformation is uncertain, but there is general agreement about its negative unfolding that might threaten…

Adaptation and Self-Organizing Systems · Physics 2014-11-24 Ricard Solé

Quantitative predictions about the processes that promote species coexistence are a subject of active research in ecology. In particular, competitive interactions are known to shape and maintain ecological communities, and situations where…

Populations and Evolution · Quantitative Biology 2020-01-22 Jose A. Capitan , Sara Cuenda , David Alonso

The possibility that evolutionary forces -- together with a few fundamental factors such as thermodynamic constraints, specific computational features enabling information processing, and ecological processes -- might constrain the logic of…

Biological Physics · Physics 2025-12-30 Manlio De Domenico

Quantitative population modelling is an invaluable tool for identifying the cascading effects of ecosystem management and interventions. Ecosystem models are often constructed by assuming stability and coexistence in ecological communities…

Populations and Evolution · Quantitative Biology 2024-09-06 Sarah A. Vollert , Christopher Drovandi , Matthew P. Adams

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Populations and Evolution · Quantitative Biology 2026-04-30 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Simon A. Levin , Andrea Rinaldo , Amos Maritan

For years, a main focus of ecological research has been to better understand the complex dynamical interactions between species which comprise food webs. Using the connectance properties of a widely explored synthetic food web called the…

Populations and Evolution · Quantitative Biology 2024-10-16 Sepideh Vafaie , Deepak Bal , Michael A. S. Thorne , Eric Forgoston

The maintenance of diversity, the `commonness of rarity', and compositional turnover are ubiquitous features of species-rich communities. Through a minimal model, we consider how these features reflect the interplay between environmental…

Populations and Evolution · Quantitative Biology 2025-12-04 Emil Mallmin , Arne Traulsen , Silvia De Monte

A central concern of community ecology is the interdependence between interaction strengths and the underlying structure of the network upon which species interact. In this work we present a solvable example of such a feedback mechanism in…

Populations and Evolution · Quantitative Biology 2024-04-15 Lyle Poley , Tobias Galla , Joseph W. Baron

Engineering a sustainable world requires to consider various systems that interact with each other. These systems include ecological systems, economical systems, social systems and tech-nical systems. They are loosely coupled,…

Software Engineering · Computer Science 2024-01-29 Rasmus Adler , Frank Elberzhager , Florian Balduf

We propose a minimal model of the dynamics of diversity -- replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kei Tokita , Ayumu Yasutomi

Mutualistic networks have attracted increasing attention in the ecological literature in the last decades as they play a key role in the maintenance of biodiversity. Here, we develop an analytical framework to study the structural stability…

Physics and Society · Physics 2021-02-05 Xiangrong Wang , Thomas Peron , Johan L. A. Dubbeldam , Sonia Kèfi , Yamir Moreno

Ecological models traditionally explain stability and coexistence through pairwise interactions among species. These interactions can also involve groups of three or more species, higher-order interactions, which recent theory suggests can…

Populations and Evolution · Quantitative Biology 2025-10-07 Marc Duran-Sala , Sandro Meloni , Violeta Calleja-Solanas
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