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Related papers: Combinatorial mappings of exclusion processes

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We present two algorithms by which a set of short, unbiased trajectories can be iteratively reweighted to obtain various observables. The first algorithm estimates the stationary (steady state) distribution of a system by iteratively…

Computational Physics · Physics 2020-06-18 John D. Russo , Jeremy Copperman , Daniel M. Zuckerman

A fundamental theory is presented for the mechanical response of polymer networks undergoing large deformation which seamlessly integrates statistical mechanical principles with macroscopic thermodynamic constitutive theory. Our formulation…

Soft Condensed Matter · Physics 2020-07-06 Michael R. Buche , Meredith N. Silberstein

The totally asymmetric simple exclusion process in discrete time is considered on finite rings with fixed number of particles. A translation-invariant version of the backward-ordered sequential update is defined for periodic boundary…

Soft Condensed Matter · Physics 2007-05-23 J. G. Brankov , Vl. V. Papoyan , V. S. Poghosyan , V. B. Priezzhev

Combinatorial Levy processes evolve on general state spaces of countable combinatorial structures. In this setting, the usual Levy process properties of stationary, independent increments are defined in an unconventional way in terms of the…

Probability · Mathematics 2016-12-20 Harry Crane

We study criteria for and properties of boundary-to-boundary holography in a class of spin network states defined by analogy to projected entangled pair states (PEPS). In particular, we consider superpositions of states corresponding to…

Quantum Physics · Physics 2022-05-23 Simon Langenscheidt

We extend the weighted ensemble (WE) path sampling method to perform rigorous statistical sampling for systems at steady state. The straightforward steady-state implementation of WE is directly practical for simple landscapes, but not when…

Biological Physics · Physics 2015-05-14 Divesh Bhatt , Bin W. Zhang , Daniel M. Zuckerman

The totally asymmetric simple exclusion process (TASEP) is a well studied example of far-from-equilibrium dynamics. Here, we consider a TASEP with open boundaries but impose a global constraint on the total number of particles. In other…

Statistical Mechanics · Physics 2008-07-02 D. A. Adams , B. Schmittmann , R. K. P. Zia

The TASEP is a paradigmatic model from non-equilibrium statistical physics, which describes particles hopping along a lattice of discrete sites. The TASEP is applicable to a broad range of different transport systems, but does not consider…

Statistical Mechanics · Physics 2012-03-20 Chris A. Brackley , Luca Ciandrini , M. Carmen Romano

In this work we construct the stationary measure of the N species totally asymmetric simple exclusion process in a matrix product formulation. We make the connection between the matrix product formulation and the queueing theory picture of…

Probability · Mathematics 2009-11-13 Martin R. Evans , Pablo A. Ferrari , Kirone Mallick

We consider partial exclusion processes~(PEPs) on the one-dimensional square lattice, that is, a system of interacting particles where each particle random walks according to a jump rate satisfying an exclusion rule that allows up to a…

Probability · Mathematics 2026-04-15 Patrícia Gonçalves , Kohei Hayashi , Makiko Sasada

The one-dimensional asymmetric simple exclusion process (ASEP), where $N$ hard-core particles hop forward with rate $1$ and backward with rate $q<1$, is considered on a periodic lattice of $L$ site. Using KPZ universality and previous…

Statistical Mechanics · Physics 2016-10-19 Sylvain Prolhac

We give a simple explanation why the stationary state of the 1D TASEP model with open boundaries is related to the Catalan numbers. Our construction is based on planar binary trees and provides a combinatorial solution of the stationary…

Combinatorics · Mathematics 2014-04-16 Xiangyu Cao

The asymmetric simple exclusion process (ASEP) is a paradigmatic driven-diffusive system that describes the asymmetric diffusion of particles with hardcore interactions in a lattice. Although the ASEP is known as an exactly solvable model,…

Statistical Mechanics · Physics 2024-05-16 Yuki Ishiguro , Jun Sato

An exact mapping is established between sequence alignment, one of the most commonly used tools of computational biology, and the asymmetric exclusion process, one of the few exactly solvable models of nonequilibrium physics. The…

Statistical Mechanics · Physics 2007-05-23 R. Bundschuh

Considering the large deviations of activity and current in the Asymmetric Simple Exclusion Process (ASEP), we show that there exists a non-trivial correspondence between the joint scaled cumulant generating functions of activity and…

Statistical Mechanics · Physics 2022-08-31 Matthieu Vanicat , Eric Bertin , Vivien Lecomte , Eric Ragoucy

We present exact and asymptotic results for clusters in the one-dimensional totally asymmetric exclusion process (TASEP) with two different dynamics. The expected length of the largest cluster is shown to diverge logarithmically with…

Statistical Mechanics · Physics 2009-11-07 O. Pulkkinen , J. Merikoski

The totally asymmetric simple exclusion process (TASEP), which describes the stochastic dynamics of interacting particles on a lattice, has been actively studied over the past several decades and applied to model important biological…

Biological Physics · Physics 2021-05-05 Dan D. Erdmann-Pham , Wonjun Son , Khanh Dao Duc , Yun S. Song

We study the effects of local inhomogeneities, i.e., slow sites of hopping rate $q<1$, in a totally asymmetric simple exclusion process (TASEP) for particles of size $\ell \geq 1$ (in units of the lattice spacing). We compare the simulation…

Statistical Mechanics · Physics 2008-05-21 J. J. Dong , B. Schmittmann , R. K. P. Zia

We extend the paradigmatic and versatile TASEP (Totally Asymmetric Simple Exclusion Process) for stochastic 1d transport to allow for two different particle species, each having specific entry and exit rates. We offer a complete mean-field…

Statistical Mechanics · Physics 2022-04-06 Pierre Bonnin , Ian Stansfield , M. Carmen Romano , Norbert Kern

It is known that when the steady state of a one-dimensional multispecies system, which evolves via a random-sequential updating mechanism, is written in terms of a linear combination of Bernoulli shock measures with random-walk dynamics, it…

Statistical Mechanics · Physics 2009-06-06 F. H. Jafarpour , S. R. Masharian