Related papers: A new record of graph enumeration enabled by paral…
For a deep learning model, efficient execution of its computation graph is key to achieving high performance. Previous work has focused on improving the performance for individual nodes of the computation graph, while ignoring the…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
In recent years, the problem of computing the frequencies of the induced $k$-vertex subgraphs of a graph, or \emph{$k$-graphlets}, has become central. One approach for this problem is to sample $k$-graphlets randomly. Classic algorithms for…
Given an underlying undirected simple graph, we consider the set of all acyclic orientations of its edges. Each of these orientations induces a partial order on the vertices of our graph and, therefore, we can count the number of linear…
Subgraph isomorphism counting is an important problem on graphs, as many graph-based tasks exploit recurring subgraph patterns. Classical methods usually boil down to a backtracking framework that needs to navigate a huge search space with…
In this paper we provide an algorithm that generates a graph with given degree sequence uniformly at random. Provided that $\Delta^4=O(m)$, where $\Delta$ is the maximal degree and $m$ is the number of edges,the algorithm runs in expected…
We initiate the study of graph algorithms in the streaming setting on massive distributed and parallel systems inspired by practical data processing systems. The objective is to design algorithms that can efficiently process evolving graphs…
From any given sequence of finite or infinite graphs, a nonstandard graph is constructed. The procedure is similar to an ultrapower construction of an internal set from a sequence of subsets of the real line, but now the individual entities…
Given a set D of nonnegative integers, we derive the asymptotic number of graphs with a givenvnumber of vertices, edges, and such that the degree of every vertex is in D. This generalizes existing results, such as the enumeration of graphs…
Havel in 1955, Erd\H{o}s and Gallai in 1960, Hakimi in 1962, Ruskey, Cohen, Eades and Scott in 1994, Barnes and Savage in 1997, Kohnert in 2004, Tripathi, Venugopalan and West in 2010 proposed a method to decide, whether a sequence of…
We develop an efficient parallel algorithm for answering shortest-path queries in planar graphs and implement it on a multi-node CPU/GPU clusters. The algorithm uses a divide-and-conquer approach for decomposing the input graph into small…
A graph $G$ is a link-irregular graph if every two distinct vertices of $G$ have non-isomorphic links. The link of a vertex $v$ in $G$ is the subgraph induced by the neighbors of $v$ in $G$. Ali, Chartrand and Zhang [Discussiones…
We describe a general purpose algorithm for counting simple cycles and simple paths of any length $\ell$ on a (weighted di)graph on $N$ vertices and $M$ edges, achieving a time complexity of $O\left(N+M+\big(\ell^\omega+\ell\Delta\big)…
Let $G$ be a graph with edge ideal $I(G)$. We recall the notions of $\min-match_{\{K_2, C_5\}}(G)$ and $\ind-match_{\{K_2, C_5\}}(G)$ from \cite{sy}. We show that $${\rm reg}(I(G)^s)\leq 2s+\min-match_{\{K_2, C_5\}}(G)-1,$$for all $s\geq…
A 1-planar graph is a graph which has a drawing on the plane such that each edge is crossed at most once. If a 1-planar graph is drawn in that way, the drawing is called a {\it 1-plane graph}. A graph is maximal 1-plane (or 1-planar) if no…
Graph isomorphism is an important problem as its worst-case time complexity is not yet fully understood. In this study, we try to draw parallels between a related optimization problem called point set registration. A graph can be…
Execution graphs of parallel loop programs exhibit a nested, repeating structure. We show how such graphs that are the result of nested repetition can be represented by succinct parametric structures. This parametric graph template…
We perform a massive evaluation of neural networks with architectures corresponding to random graphs of various types. We investigate various structural and numerical properties of the graphs in relation to neural network test accuracy. We…
For the set of graphs with a given degree sequence, consisting of any number of $2's$ and $1's$, and its subset of bipartite graphs, we characterize the optimal graphs who maximize and minimize the number of $m$-matchings. We find the…
Understanding spatial correlation is vital in many fields including epidemiology and social science. Lee, Meeks and Pettersson (Stat. Comput. 2021) recently demonstrated that improved inference for areal unit count data can be achieved by…