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The application of Large Language Models (LLMs) in software engineering, particularly in static analysis tasks, represents a paradigm shift in the field. In this paper, we investigate the role that current LLMs can play in improving…

Software Engineering · Computer Science 2024-02-28 Ashwin Prasad Shivarpatna Venkatesh , Samkutty Sabu , Amir M. Mir , Sofia Reis , Eric Bodden

Malicious code in open-source repositories such as PyPI poses a growing threat to software supply chains. Traditional rule-based tools often overlook the semantic patterns in source code that are crucial for identifying adversarial…

Software Engineering · Computer Science 2026-01-27 Muhammad Umar Zeshan , Motunrayo Ibiyo , Claudio Di Sipio , Phuong T. Nguyen , Davide Di Ruscio

One major challenge in science is to make all results potentially reproducible. Thus, along with the raw data, every step from basic processing of the data, evaluation, to the generation of the figures, has to be documented as clearly as…

Graphics · Computer Science 2020-07-31 Richard Gerum

Braidlab is a Matlab package for analyzing data using braids. It was designed to be fast, so it can be used on relatively large problems. It uses the object-oriented features of Matlab to provide a class for braids on punctured disks and a…

Geometric Topology · Mathematics 2019-11-18 Jean-Luc Thiffeault , Marko Budisic

A deep neural network is a parametrization of a multilayer mapping of signals in terms of many alternatively arranged linear and nonlinear transformations. The linear transformations, which are generally used in the fully connected as well…

Machine Learning · Computer Science 2020-07-01 Ze-Feng Gao , Song Cheng , Rong-Qiang He , Z. Y. Xie , Hui-Hai Zhao , Zhong-Yi Lu , Tao Xiang

We introduce PyText - a deep learning based NLP modeling framework built on PyTorch. PyText addresses the often-conflicting requirements of enabling rapid experimentation and of serving models at scale. It achieves this by providing simple…

We analyze the bit complexity of efficient algorithms for fundamental optimization problems, such as linear regression, $p$-norm regression, and linear programming (LP). State-of-the-art algorithms are iterative, and in terms of the number…

Data Structures and Algorithms · Computer Science 2023-04-06 Mehrdad Ghadiri , Richard Peng , Santosh S. Vempala

SMLP: Symbolic Machine Learning Prover an open source tool for exploration and optimization of systems represented by machine learning models. SMLP uses symbolic reasoning for ML model exploration and optimization under verification and…

Machine Learning · Computer Science 2024-05-17 Franz Brauße , Zurab Khasidashvili , Konstantin Korovin

Many areas of machine learning and science involve large linear algebra problems, such as eigendecompositions, solving linear systems, computing matrix exponentials, and trace estimation. The matrices involved often have Kronecker,…

Machine Learning · Computer Science 2023-11-30 Andres Potapczynski , Marc Finzi , Geoff Pleiss , Andrew Gordon Wilson

PyLlama is a handy Python toolkit to compute the electromagnetic reflection and transmission properties of arbitrary multilayered linear media, including the case of anisotropy. Relying on a $4 \times 4$-matrix formalism, PyLlama implements…

Optics · Physics 2021-12-24 Mélanie M. Bay , Silvia Vignolini , Kevin Vynck

Mixed integer nonlinear programming (MINLP) problems are encountered in modeling a physical/industrial process consisting both nonlinearity and discrete selective parameters. There are variety of algorithms for solving MINLP problems most…

Optimization and Control · Mathematics 2024-05-17 Negin Bagherpour , Mahdi Sharifzadeh

Integrating deep learning techniques, particularly language models (LMs), with knowledge representation techniques like ontologies has raised widespread attention, urging the need of a platform that supports both paradigms. Although…

Artificial Intelligence · Computer Science 2024-03-12 Yuan He , Jiaoyan Chen , Hang Dong , Ian Horrocks , Carlo Allocca , Taehun Kim , Brahmananda Sapkota

Convex optimization is an essential tool for machine learning, as many of its problems can be formulated as minimization problems of specific objective functions. While there is a large variety of algorithms available to solve convex…

Machine Learning · Computer Science 2016-12-28 Nathanael Perraudin , Vassilis Kalofolias , David Shuman , Pierre Vandergheynst

In this paper, we present a generalized version of the matrix chain algorithm to generate efficient code for linear algebra problems, a task for which human experts often invest days or even weeks of works. The standard matrix chain problem…

Mathematical Software · Computer Science 2018-04-12 Henrik Barthels , Marcin Copik , Paolo Bientinesi

Machine Learning operations is unarguably a very important and also one of the hottest topics in Artificial Intelligence lately. Being able to define very clear hypotheses for actual real-life problems that can be addressed by machine…

Machine Learning · Computer Science 2022-01-31 Razvan Ciobanu , Alexandru Purdila , Laurentiu Piciu , Andrei Damian

Python for Power System Analysis (PyPSA) is a free software toolbox for simulating and optimising modern electrical power systems over multiple periods. PyPSA includes models for conventional generators with unit commitment, variable…

Physics and Society · Physics 2018-01-18 Tom Brown , Jonas Hörsch , David Schlachtberger

Bilevel optimization has been widely used in decision-making process. However, there still lacks an efficient algorithm to determine an optimal solution of a bilevel optimization problem, especially for a large-size problem. To bridge the…

Optimization and Control · Mathematics 2016-05-18 Xuan Liu , Zuyi Li

This paper describes AllenNLP, a platform for research on deep learning methods in natural language understanding. AllenNLP is designed to support researchers who want to build novel language understanding models quickly and easily. It is…

Computation and Language · Computer Science 2018-06-01 Matt Gardner , Joel Grus , Mark Neumann , Oyvind Tafjord , Pradeep Dasigi , Nelson Liu , Matthew Peters , Michael Schmitz , Luke Zettlemoyer

We present PyLRO, an open-source Python calculator designed to detect, quantify, and display long-range order in periodic structures. The program's design methodology, workflow, and approach to order quantification are described and…

Materials Science · Physics 2025-06-06 Kevin Parrish , Qingyang Hu , Qiang Zhu

PySensors is a Python package for selecting and placing a sparse set of sensors for classification and reconstruction tasks. Specifically, PySensors implements algorithms for data-driven sparse sensor placement optimization for…

Signal Processing · Electrical Eng. & Systems 2021-03-01 Brian M. de Silva , Krithika Manohar , Emily Clark , Bingni W. Brunton , Steven L. Brunton , J. Nathan Kutz
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