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In this paper we consider two problems in diagnostics of trapped ion crystals in which an analysis of the ions' collective oscillatory motion yield potentially useful results. When one of the ions in a linear crystal undergoes a collision,…

Quantum Physics · Physics 2022-12-07 Itzal D. U. Terrazas , Daniel F. V. James

Atomic ions trapped in ultra-high vacuum form an especially well-understood and useful physical system for quantum information processing. They provide excellent shielding of quantum information from environmental noise, while strong,…

Quantum Physics · Physics 2008-11-16 D. Kielpinski

An open-source, Python-based Temporal Analysis of Products (TAP) reactor simulation and processing program is introduced. TAPsolver utilizes algorithmic differentiation for the calculation of highly accurate derivatives, which are used to…

Computational Engineering, Finance, and Science · Computer Science 2020-09-01 Adam Yonge , M. Ross Kunz , Rakesh Batchu , Zongtang Fang , Tobin Issac , Rebecca Fushimi , Andrew J. Medford

We present an overview of PION, an open-source software project for solving radiation-magnetohydrodynamics equations on a nested grid, aimed at modelling asymmetric nebulae around massive stars. A new implementation of hybrid OpenMP/MPI…

The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

In the development of atomic, molecular and optical (AMO) physics, atom-ion hybrid systems are characterized by the presence of a new tool in the experimental AMO toolbox: atom-ion interactions. One of the main limitations in…

Atomic Physics · Physics 2020-02-03 Elia Perego , Lucia Duca , Carlo Sias

Molecular dynamics (MD) simulations play a crucial role in resolving the underlying conformational dynamics of molecular systems. However, their capability to correctly reproduce and predict dynamics in agreement with experiments is limited…

Chemical Physics · Physics 2025-05-19 Ivan Gilardoni , Valerio Piomponi , Thorben Fröhlking , Giovanni Bussi

Ordinary Differential Equations (ODE) are used throughout science where the capture of rates of change in states is sought. While both pieces of commercial and open software exist to study such systems, their efficient and accurate usage…

Mathematical Software · Computer Science 2018-03-20 Edwin Tye , Tom Finnie , Ian Hall , Steve Leach

OrbDot is a Python package for studying the secular (long-term) evolution of exoplanet orbits from observational data. It employs nested sampling algorithms to fit evolutionary models to any combination of transit and eclipse mid-times,…

Instrumentation and Methods for Astrophysics · Physics 2025-09-08 Simone R. Hagey , Aaron Boley

DORAEMON is an open-source PyTorch library that unifies visual object modeling and representation learning across diverse scales. A single YAML-driven workflow covers classification, retrieval and metric learning; more than 1000 pretrained…

Computer Vision and Pattern Recognition · Computer Science 2025-11-07 Ke Du , Yimin Peng , Chao Gao , Fan Zhou , Siqiao Xue

Trapped atomic ions have become one of the most promising architectures for a quantum computer, and current effort is now devoted to the transport of trapped ions through complex segmented ion trap structures in order to scale up to much…

Quantum Physics · Physics 2008-02-20 D. Hucul , M. Yeo , W. K. Hensinger , J. Rabchuk , S. Olmschenk , C. Monroe

The emission lines from ionized nebulae allow us to determine their physical and chemical properties, along with the interstellar extinction. "pyEQUIB" is a pure Python open-source package including several application programming interface…

Instrumentation and Methods for Astrophysics · Physics 2024-11-25 A. Danehkar

The study of trajectories is often a core task in several research fields. In environmental modelling, trajectories are crucial to study fluid pollution, animal migrations, oil slick patterns or land movements. In this contribution, we…

Computation · Statistics 2022-09-23 A. Reyes , G. Viera-López , J. J. Morgado-Vega , E. Altshuler

SALMON (Scalable Ab-initio Light-Matter simulator for Optics and Nanoscience, http://salmon-tddft.jp) is a software package for the simulation of electron dynamics and optical properties of molecules, nanostructures, and crystalline solids…

The computational difficulty of solving fully quantum many-body spin problems is a significant obstacle to understanding the behavior of strongly correlated quantum matter. Experimental ion-trap quantum simulation is a promising approach…

Quantum Physics · Physics 2016-09-28 Philip Richerme

This article describes lcpy, an open-source python package that allows for advanced parametric Life Cycle Assessment (LCA) and Life Cycle Costing (LCC) analysis. The package is designed to allow the user to model a process with a flexible,…

Emerging Technologies · Computer Science 2025-06-17 Spiros Gkousis , Evina Katsou

In nuclear and particle physics, reconciling sophisticated simulations with experimental data is vital for understanding complex systems like the Quark Gluon Plasma (QGP) generated in heavy-ion collisions. However, computational demands…

Nuclear Theory · Physics 2026-02-03 Hendrik Roch , Syed Afrid Jahan , Chun Shen

Recent research in materials science opens exciting perspectives to design novel quantum materials and devices, but it calls for quantitative predictions of properties which are not accessible in standard first principles packages. PAOFLOW…

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

Automated searches for strong gravitational lensing in optical imaging survey datasets often employ machine learning and deep learning approaches. These techniques require more example systems to train the algorithms than have presently…

Instrumentation and Methods for Astrophysics · Physics 2021-02-08 Robert Morgan , Brian Nord , Simon Birrer , Joshua Yao-Yu Lin , Jason Poh