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Biomedical summarization requires large datasets to train for text generation. We show that while transfer learning offers a viable option for addressing this challenge, an in-domain pre-training does not always offer advantages in a BioASQ…

Computation and Language · Computer Science 2023-07-11 Dima Galat , Marian-Andrei Rizoiu

In the medical domain, numerous scenarios necessitate the long-form generation ability of large language models (LLMs). Specifically, when addressing patients' questions, it is essential that the model's response conveys factual claims,…

Computation and Language · Computer Science 2024-10-16 Minbyul Jeong , Hyeon Hwang , Chanwoong Yoon , Taewhoo Lee , Jaewoo Kang

Large Language Models (LLMs) have demonstrated remarkable success in various tasks such as natural language understanding, text summarization, and machine translation. However, their general-purpose nature often limits their effectiveness…

Computation and Language · Computer Science 2025-09-03 Zirui Song , Bin Yan , Yuhan Liu , Miao Fang , Mingzhe Li , Rui Yan , Xiuying Chen

With the rapid growth of large language models (LLMs) and vision-language models (VLMs) in medicine, simply integrating clinical text and medical imaging does not guarantee reliable reasoning. Existing multimodal models often produce…

Artificial Intelligence · Computer Science 2025-12-29 Zelin Zang , Wenyi Gu , Siqi Ma , Dan Yang , Yue Shen , Zhu Zhang , Guohui Fan , Wing-Kuen Ling , Fuji Yang

Accurate and efficient question-answering systems are essential for delivering high-quality patient care in the medical field. While Large Language Models (LLMs) have made remarkable strides across various domains, they continue to face…

Computation and Language · Computer Science 2025-01-22 Hang Yang , Hao Chen , Hui Guo , Yineng Chen , Ching-Sheng Lin , Shu Hu , Jinrong Hu , Xi Wu , Xin Wang

Novel contexts may often arise in complex querying scenarios such as in evidence-based medicine (EBM) involving biomedical literature, that may not explicitly refer to entities or canonical concept forms occurring in any fact- or rule-based…

Computation and Language · Computer Science 2019-11-12 Manirupa Das , Juanxi Li , Eric Fosler-Lussier , Simon Lin , Soheil Moosavinasab , Steve Rust , Yungui Huang , Rajiv Ramnath

Entity Alignment (EA) aims to find the equivalent entities between two Knowledge Graphs (KGs). Existing methods usually encode the triples of entities as embeddings and learn to align the embeddings, which prevents the direct interaction…

Computation and Language · Computer Science 2023-05-22 Yu Zhao , Yike Wu , Xiangrui Cai , Ying Zhang , Haiwei Zhang , Xiaojie Yuan

Large Language Models (LLMs) have been widely applied in various professional fields. By fine-tuning the models using domain specific question and answer datasets, the professional domain knowledge and Q\&A abilities of these models have…

Computation and Language · Computer Science 2024-07-17 Qimin Yang , Rongsheng Wang , Jiexin Chen , Runqi Su , Tao Tan

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in…

The overwhelming amount of biomedical scientific texts calls for the development of effective language models able to tackle a wide range of biomedical natural language processing (NLP) tasks. The most recent dominant approaches are…

Computation and Language · Computer Science 2021-04-21 Giacomo Miolo , Giulio Mantoan , Carlotta Orsenigo

Text-rich document understanding (TDU) requires comprehensive analysis of documents containing substantial textual content and complex layouts. While Multimodal Large Language Models (MLLMs) have achieved fast progress in this domain,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-20 Wenhui Liao , Jiapeng Wang , Hongliang Li , Chengyu Wang , Jun Huang , Lianwen Jin

Large language models (LLMs) have made significant progress in various domains, including healthcare. However, the specialized nature of clinical language understanding tasks presents unique challenges and limitations that warrant further…

Computation and Language · Computer Science 2023-08-01 Yuqing Wang , Yun Zhao , Linda Petzold

Knowledge enhanced pre-trained language models (K-PLMs) are shown to be effective for many public tasks in the literature but few of them have been successfully applied in practice. To address this problem, we propose K-AID, a systematic…

Artificial Intelligence · Computer Science 2021-09-23 Fu Sun , Feng-Lin Li , Ruize Wang , Qianglong Chen , Xingyi Cheng , Ji Zhang

Working within specific NLP subdomains presents significant challenges, primarily due to a persistent deficit of data. Stringent privacy concerns and limited data accessibility often drive this shortage. Additionally, the medical domain…

Computation and Language · Computer Science 2024-11-19 Priyanka Singh , Vladislav D. Mosin , Ivan P. Yamshchikov

We present Contextual Discourse Vectors (CDV), a distributed document representation for efficient answer retrieval from long healthcare documents. Our approach is based on structured query tuples of entities and aspects from free text and…

Computation and Language · Computer Science 2020-02-04 Sebastian Arnold , Betty van Aken , Paul Grundmann , Felix A. Gers , Alexander Löser

We propose a novel methodology to generate domain-specific large-scale question answering (QA) datasets by re-purposing existing annotations for other NLP tasks. We demonstrate an instance of this methodology in generating a large-scale QA…

Computation and Language · Computer Science 2018-09-05 Anusri Pampari , Preethi Raghavan , Jennifer Liang , Jian Peng

Previous work on clinical relation extraction from free-text sentences leveraged information about semantic types from clinical knowledge bases as a part of entity representations. In this paper, we exploit additional evidence by also…

Computation and Language · Computer Science 2025-03-10 Linh Le , Guido Zuccon , Gianluca Demartini , Genghong Zhao , Xia Zhang

In the real world, knowledge often exists in a multimodal and heterogeneous form. Addressing the task of question answering with hybrid data types, including text, tables, and images, is a challenging task (MMHQA). Recently, with the rise…

Computation and Language · Computer Science 2023-09-12 Weihao Liu , Fangyu Lei , Tongxu Luo , Jiahe Lei , Shizhu He , Jun Zhao , Kang Liu

Visual question answering (VQA) is crucial for promoting surgical education. In practice, the needs of trainees are constantly evolving, such as learning more surgical types, adapting to different robots, and learning new surgical…

Information Retrieval · Computer Science 2024-10-24 Yuyang Du , Kexin Chen , Yue Zhan , Chang Han Low , Tao You , Mobarakol Islam , Ziyu Guo , Yueming Jin , Guangyong Chen , Pheng-Ann Heng

Large Language Models (LLMs) have made significant progress in various fields. However, challenges remain in Multi-Disciplinary Team (MDT) medical consultations. Current research enhances reasoning through role assignment, task…

Artificial Intelligence · Computer Science 2025-03-19 Kai Chen , Xinfeng Li , Tianpei Yang , Hewei Wang , Wei Dong , Yang Gao