Related papers: Complexity of Modification Problems for Reciprocal…
An edge-colored graph $G$ is said to be rainbow connected if between each pair of vertices there exists a path which uses each color at most once. The rainbow connection number, denoted by $rc(G)$, is the minimum number of colors needed to…
In a simple, undirected graph G, an edge 2-coloring is a coloring of the edges such that no vertex is incident to edges with more than 2 distinct colors. The problem maximum edge 2-coloring (ME2C) is to find an edge 2-coloring in a graph G…
Genetic algorithms have played an important role in engineering optimization. Traditional GAs treat each gene separately. However, biophysical studies of gene regulatory networks revealed direct associations between different genes. It…
The reconfiguration graph $\mathcal{C}_k(G)$ for the $k$-colourings of a graph $G$ has a vertex for each proper $k$-colouring of $G$, and two vertices of $\mathcal{C}_k(G)$ are adjacent precisely when those $k$-colourings differ on a single…
In an edge modification problem, we are asked to modify at most $k$ edges to a given graph to make the graph satisfy a certain property. Depending on the operations allowed, we have the completion problems and the edge deletion problems. A…
A $b$-coloring of a graph is a proper vertex coloring such that each color class contains a vertex that sees all other colors in its neighborhood. The $b$-coloring problem, in which the task is to decide whether a graph admits a…
This paper studies the problem of matching two complete graphs with edge weights correlated through latent geometries, extending a recent line of research on random graph matching with independent edge weights to geometric models.…
The phylogenetic tree construction is to infer the evolutionary relationship between species from the experimental data. However, the experimental data are often imperfect and conflicting each others. Therefore, it is important to extract…
Genome-scale orthology assignments are usually based on reciprocal best matches. In the absence of horizontal gene transfer (HGT), every pair of orthologs forms a reciprocal best match. Incorrect orthology assignments therefore are always…
A well-studied coloring problem is to assign colors to the edges of a graph $G$ so that, for every pair of vertices, all edges of at least one shortest path between them receive different colors. The minimum number of colors necessary in…
In vertex recoloring, we are given $n$ vertices with their initial coloring, and edges arrive in an online fashion. The algorithm must maintain a valid coloring by recoloring vertices, at a cost. The problem abstracts a scenario of job…
We present a deterministic distributed algorithm that computes a $(2\Delta-1)$-edge-coloring, or even list-edge-coloring, in any $n$-node graph with maximum degree $\Delta$, in $O(\log^7 \Delta \log n)$ rounds. This answers one of the…
We consider a variant of the densest subgraph problem in networks with single or multiple edge attributes. For example, in a social network, the edge attributes may describe the type of relationship between users, such as friends, family,…
It has been shown by Bokal et al. that deciding 2-colourability of digraphs is an NP-complete problem. This result was later on extended by Feder et al. to prove that deciding whether a digraph has a circular $p$-colouring is NP-complete…
Many of the commonly used methods for orthology detection start from mutually most similar pairs of genes (reciprocal best hits) as an approximation for evolutionary most closely related pairs of genes (reciprocal best matches). This…
In multi-channel Wireless Mesh Networks (WMN), each node is able to use multiple non-overlapping frequency channels. Raniwala et al. (MC2R 2004, INFOCOM 2005) propose and study several such architectures in which a computer can have…
Color Refinement, also known as Naive Vertex Classification, is a classical method to distinguish graphs by iteratively computing a coloring of their vertices. While it is mainly used as an imperfect way to test for isomorphism, the…
We consider the red-blue-yellow matching problem: given two natural numbers $k_R$, $k_B$ and a graph $G$ whose edges are colored red, blue or yellow, the goal is to find a matching of $G$ that contains exactly $k_R$ red edges and exactly…
Pedigree graphs, or family trees, are typically constructed by an expensive process of examining genealogical records to determine which pairs of individuals are parent and child. New methods to automate this process take as input genetic…
Color-constrained subgraph problems are those where we are given an edge-colored (directed or undirected) graph and the task is to find a specific type of subgraph, like a spanning tree, an arborescence, a single-source shortest path tree,…