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Stochastic Process Model has many applications in analysis of longitudinal biodemographic data. Such data contain various physiological variables (sometimes known as covariates). It also can potentially contain genetic information available…

Populations and Evolution · Quantitative Biology 2016-05-31 Ilya Zhbannikov , Konstantin Arbeev , Anatoliy Yashin

We present SimSpin, a new, public, software framework for generating integral field spectroscopy (IFS) data cubes from N-body/hydrodynamical simulations of galaxies, which can be compared directly with observational datasets. SimSpin…

Astrophysics of Galaxies · Physics 2020-05-26 K. E. Harborne , C. Power , A. S. G. Robotham

In this paper, we propose an R package, called RKHSMetaMod, that implements a procedure for estimating a meta-model of a complex model. The meta-model approximates the Hoeffding decomposition of the complex model and allows us to perform…

Machine Learning · Statistics 2021-12-28 Halaleh Kamari , Sylvie Huet , Marie-Luce Taupin

We describe Rabacus, a Python package for calculating the transfer of hydrogen ionizing radiation in simplified geometries relevant to astronomy and cosmology. We present example solutions for three specific cases: 1) a semi-infinite slab…

Cosmology and Nongalactic Astrophysics · Physics 2015-02-26 Gabriel Altay , John Wise

It is commonplace in cosmology to analyze fields projected onto the celestial sphere, and in particular density fields that are defined by a set of points e.g. galaxies. When performing an harmonic-space analysis of such data (e.g. an…

Cosmology and Nongalactic Astrophysics · Physics 2024-04-02 Antón Baleato Lizancos , Martin White

The R Package IBMPopSim aims to simulate the random evolution of heterogeneous populations using stochastic Individual-Based Models (IBMs). The package enables users to simulate population evolution, in which individuals are characterized…

Populations and Evolution · Quantitative Biology 2024-02-28 Daphné Giorgi , Sarah Kaakai , Vincent Lemaire

Clustering properties and peculiar velocities of halos in large-scale structure carry a wealth of cosmological information over a wide range of scales from linear to nonlinear scales. We use halo catalogs in a suite of high-resolution…

Cosmology and Nongalactic Astrophysics · Physics 2020-01-22 Yosuke Kobayashi , Takahiro Nishimichi , Masahiro Takada , Ryuichi Takahashi

Phases of the spherical harmonic analysis of full-sky cosmic microwave background (CMB) temperature data contain useful information complementary to the ubiquitous angular power spectrum. In this letter we present a new method of phase…

Astrophysics · Physics 2009-11-16 Lung-Yih Chiang , Pavel D. Naselsky

Spectroscopic redshift surveys offer great prospects for constraining the dark sector in cosmology. Future surveys will however be both deep and wide and will thus require an analysis in 3-dimensional spherical geometry. We review and…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-19 Andrina Nicola , Alexandre Refregier , Adam Amara , Aseem Paranjape

Spatial transcriptomics is a modern sequencing technology that allows the measurement of the activity of thousands of genes in a tissue sample and map where the activity is occurring. This technology has enabled the study of the so-called…

Methodology · Statistics 2022-09-15 Andrea Sottosanti , Davide Risso

To harness the full benefit of new computing platforms, it is necessary to develop software with parallel computing capabilities. This is no less true for statisticians than for astrophysicists. The R programming language, which is perhaps…

Computation · Statistics 2017-09-08 George Ostrouchov , Wei-Chen Chen , Drew Schmidt

Many relevant applications in the environmental and socioeconomic sciences use areal data, such as biodiversity checklists, agricultural statistics, or socioeconomic surveys. For applications that surpass the spatial, temporal or thematic…

Databases · Computer Science 2020-07-15 Steffen Ehrmann , Ralf Seppelt , Carsten Meyer

This research proposes an effective vertical clustering strategy of 3D data in an elliptical helical shape based on 2D geometry. The clustering object is an elliptical cross-sectioned metal pipe which is been bended in to an elliptical…

Computational Engineering, Finance, and Science · Computer Science 2014-02-10 Wasantha Samarathunga , Masatoshi Seki , Hidenobu Saito , Ken Ichiryu , Yasuhiro Ohyama

The ever-increasing quality and complexity of astronomical data underscores the need for new and powerful data analysis applications. This need has led to the development of Sherpa, a modeling and fitting program in the CIAO software…

Astrophysics · Physics 2009-11-07 Peter E. Freeman , Stephen Doe , Aneta Siemiginowska

The Hubble Space Telescope (HST) NICMOS instrument has been used from 1997 to 2008 to perform coronagraphic observations of about 400 targets. Most of them were part of surveys looking for substellar companions or resolved circumstellar…

Earth and Planetary Astrophysics · Physics 2018-04-25 J. B. Hagan , E. Choquet , R. Soummer , A. Vigan

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

The rebmix package provides R functions for random univariate and multivariate finite mixture model generation, estimation, clustering and classification. The paper is focused on multivariate normal mixture models with unrestricted…

Machine Learning · Statistics 2018-01-29 Marko Nagode

Today's astronomical projects need computational systems capable to store and analyze large amounts of scientific data, to effectively share data with other research Institutes and to easily implement information services to present data…

Astrophysics · Physics 2007-05-23 G. Calderone , L. Nicastro

An R package SpatialPack that implements routines to compute point estimators and perform hypothesis testing of the spatial association between two stochastic sequences is introduced. These methods address the spatial association between…

Applications · Statistics 2016-11-17 Felipe Osorio , Ronny Vallejos , Francisco Cuevas

Analyzing and working with big data could be very diffi cult using classical means like relational database management systems or desktop software packages for statistics and visualization. Instead, big data requires large clusters with…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-09 Bogdan Oancea , Raluca Mariana Dragoescu
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