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Biomedical research yields a wealth of information, much of which is only accessible through the literature. Consequently, literature search is an essential tool for building on prior knowledge in clinical and biomedical research. Although…

Information Retrieval · Computer Science 2024-04-10 Qiao Jin , Robert Leaman , Zhiyong Lu

PubMed is a freely accessible system for searching the biomedical literature, with approximately 2.5 million users worldwide on an average workday. We have recently developed PubMed Labs (www.pubmed.gov/labs), an experimental platform for…

PubMed's current search interface makes it tedious to systematically search for medical and research literature on drugs that could potentially be used to treat a given pathology, including patients with genetically altered tumors. This is…

Digital Libraries · Computer Science 2024-12-18 David Massart , Marc Zeicher

The recent developments in the field of biomedicine have made large volumes of biomedical literature available to the medical practitioners. Due to the large size and lack of efficient searching strategies, medical practitioners struggle to…

Computation and Language · Computer Science 2018-05-16 M A H Zahid , Ankush Mittal , R. C. Joshi , G. Atluri

The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…

Information Retrieval · Computer Science 2020-11-10 Alberto Calderone

Keeping track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts…

Keeping track of the ever-increasing body of scientific literature is an escalating challenge. We present PubTree a hierarchical search tool that efficiently searches the PubMed/MEDLINE dataset based upon a decision tree constructed using…

Information Retrieval · Computer Science 2017-02-28 William Rowe , Paul D. Dobson , Bede Constantinides , Mark Platt

Digital libraries maintain extensive collections of knowledge and need to provide effective access paths for their users. For instance, PubPharm, the specialized information service for Pharmacy in Germany, provides and develops access…

Information Retrieval · Computer Science 2025-09-15 Hermann Kroll , Pascal Sackhoff , Bill Matthias Thang , Christin Katharina Kreutz , Wolf-Tilo Balke

Clinicians face several significant barriers to search and synthesize accurate, succinct, updated, and trustworthy medical information from several literature sources during the practice of medicine and patient care. In this talk, we will…

We present a system that constructs and maintains an up-to-date co-occurrence network of medical concepts based on continuously mining the latest biomedical literature. Users can explore this network visually via a concise online interface…

Information Retrieval · Computer Science 2015-03-20 Alexei Yavlinsky

Currently, most people use PubMed to search the MEDLINE database, an important bibliographical information source for life science and biomedical information. However, PubMed has some drawbacks that make it difficult to find relevant…

Information Retrieval · Computer Science 2015-09-01 James Z. Wang , Yuanyuan Zhang , Liang Dong , Lin Li , Pradip K Srimani , Philip S. Yu

With an exponentially growing number of scientific papers published each year, advanced tools for exploring and discovering publications of interest are becoming indispensable. To empower users beyond a simple keyword search provided e.g.…

Information Retrieval · Computer Science 2017-06-27 Franziska Horn

The increasing rate at which scientific knowledge is discovered and health claims shared online has highlighted the importance of developing efficient fact-checking systems for scientific claims. The usual setting for this task in the…

Computation and Language · Computer Science 2024-02-06 Juraj Vladika , Florian Matthes

Now a day's, search engines are been most widely used for extracting information's from various resources throughout the world. Where, majority of searches lies in the field of biomedical for retrieving related documents from various…

Information Retrieval · Computer Science 2009-12-14 Jayanthi Manicassamy , P. Dhavachelvan

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

Over the past decade, there has been a steep rise in the data-driven analysis in major areas of medicine, such as clinical decision support system, survival analysis, patient similarity analysis, image analytics etc. Most of the data in the…

Information Retrieval · Computer Science 2020-10-06 Sheikh Shams Azam , Manoj Raju , Venkatesh Pagidimarri , Vamsi Kasivajjala

With increasing and extensive use of electronic health records, clinicians are often under time pressure when they need to retrieve important information efficiently among large amounts of patients' health records in clinics. While a search…

Information Retrieval · Computer Science 2020-08-05 Zhiyun Ren , Bo Peng , Titus K. Schleyer , Xia Ning

Here we study the semantic search and retrieval problem in biomedical digital libraries. First, we introduce MedGraph, a knowledge graph embedding-based method that provides semantic relevance retrieval and ranking for the biomedical…

Information Retrieval · Computer Science 2021-12-15 Islam Akef Ebeid , Elizabeth Pierce

We present ClinicalTrialsHub, an interactive search-focused platform that consolidates all data from ClinicalTrials.gov and augments it by automatically extracting and structuring trial-relevant information from PubMed research articles.…

Computation and Language · Computer Science 2026-03-20 Jiwoo Park , Ruoqi Liu , Avani Jagdale , Andrew Srisuwananukorn , Jing Zhao , Lang Li , Ping Zhang , Sachin Kumar

The Internet has become a very powerful platform where diverse medical information are expressed daily. Recently, a huge growth is seen in searches like symptoms, diseases, medicines, and many other health related queries around the globe.…

Multiagent Systems · Computer Science 2021-01-26 Nilanjan Sinhababu , Rahul Saxena , Monalisa Sarma , Debasis Samanta
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