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Related papers: $L_p$ Pattern Matching in a Stream

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We consider the problem of computing a $(1+\epsilon)$-approximation of the Hamming distance between a pattern of length $n$ and successive substrings of a stream. We first look at the one-way randomised communication complexity of this…

Data Structures and Algorithms · Computer Science 2016-02-24 Raphael Clifford , Tatiana Starikovskaya

We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…

Data Structures and Algorithms · Computer Science 2020-01-03 Timothy M. Chan , Shay Golan , Tomasz Kociumaka , Tsvi Kopelowitz , Ely Porat

In this work, we revisit the fundamental and well-studied problem of approximate pattern matching under edit distance. Given an integer $k$, a pattern $P$ of length $m$, and a text $T$ of length $n \ge m$, the task is to find substrings of…

Data Structures and Algorithms · Computer Science 2021-06-14 Tomasz Kociumaka , Ely Porat , Tatiana Starikovskaya

We consider the streaming complexity of a fundamental task in approximate pattern matching: the $k$-mismatch problem. It asks to compute Hamming distances between a pattern of length $n$ and all length-$n$ substrings of a text for which the…

Data Structures and Algorithms · Computer Science 2018-04-10 Raphaël Clifford , Tomasz Kociumaka , Ely Porat

Histograms, i.e., piece-wise constant approximations, are a popular tool used to represent data distributions. Traditionally, the difference between the histogram and the underlying distribution (i.e., the approximation error) is measured…

Data Structures and Algorithms · Computer Science 2022-07-19 Justin Y. Chen , Piotr Indyk , Tal Wagner

In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an…

Data Structures and Algorithms · Computer Science 2021-06-22 Paweł Gawrychowski , Tatiana Starikovskaya

Text-to-pattern distance is a fundamental problem in string matching, where given a pattern of length $m$ and a text of length $n$, over an integer alphabet, we are asked to compute the distance between pattern and the text at every…

Data Structures and Algorithms · Computer Science 2020-05-04 Przemysław Uznański

The problem of finding \emph{distance} between \emph{pattern} of length $m$ and \emph{text} of length $n$ is a typical way of generalizing pattern matching to incorporate dissimilarity score. For both Hamming and $L_1$ distances only a…

Data Structures and Algorithms · Computer Science 2018-05-04 Przemysław Uznański

We present a new streaming algorithm for the $k$-Mismatch problem, one of the most basic problems in pattern matching. Given a pattern and a text, the task is to find all substrings of the text that are at the Hamming distance at most $k$…

Data Structures and Algorithms · Computer Science 2019-04-24 Jakub Radoszewski , Tatiana Starikovskaya

We revisit the complexity of one of the most basic problems in pattern matching. In the k-mismatch problem we must compute the Hamming distance between a pattern of length m and every m-length substring of a text of length n, as long as…

Data Structures and Algorithms · Computer Science 2015-08-28 Raphaël Clifford , Allyx Fontaine , Ely Porat , Benjamin Sach , Tatiana Starikovskaya

We initiate a broad study of classical problems in the streaming model with insertions and deletions in the setting where we allow the approximation factor $\alpha$ to be much larger than $1$. Such algorithms can use significantly less…

Data Structures and Algorithms · Computer Science 2022-07-19 Yi Li , Honghao Lin , David P. Woodruff , Yuheng Zhang

We study the problem of partitioning integer sequences in the one-pass data streaming model. Given is an input stream of integers $X \in \{0, 1, \dots, m \}^n$ of length $n$ with maximum element $m$, and a parameter $p$. The goal is to…

Data Structures and Algorithms · Computer Science 2014-07-08 Christian Konrad , László Kozma

We characterize the streaming space complexity of every symmetric norm $l$ (a norm on $\mathbb{R}^n$ invariant under sign-flips and coordinate-permutations), by relating this space complexity to the measure-concentration characteristics of…

Data Structures and Algorithms · Computer Science 2017-06-27 Jaroslaw Blasiok , Vladimir Braverman , Stephen R. Chestnut , Robert Krauthgamer , Lin F. Yang

An important challenge in the streaming model is to maintain small-space approximations of entrywise functions performed on a matrix that is generated by the outer product of two vectors given as a stream. In other works, streams typically…

Data Structures and Algorithms · Computer Science 2015-11-04 Vladimir Braverman , Alan Roytman , Gregory Vorsanger

Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the approximate pattern matching problem asks for computation of a particular \emph{distance} function between $P$ and every $m$-substring of $T$. We consider a…

Data Structures and Algorithms · Computer Science 2019-07-24 Jan Studený , Przemysław Uznański

In this paper, we study streaming algorithms that minimize the number of changes made to their internal state (i.e., memory contents). While the design of streaming algorithms typically focuses on minimizing space and update time, these…

Data Structures and Algorithms · Computer Science 2024-06-12 Rajesh Jayaram , David P. Woodruff , Samson Zhou

In many problems in data mining and machine learning, data items that need to be clustered or classified are not points in a high-dimensional space, but are distributions (points on a high dimensional simplex). For distributions, natural…

Data Structures and Algorithms · Computer Science 2007-07-13 Sudipto Guha , Andrew McGregor , Suresh Venkatasubramanian

We study the classic Text-to-Pattern Hamming Distances problem: given a pattern $P$ of length $m$ and a text $T$ of length $n$, both over a polynomial-size alphabet, compute the Hamming distance between $P$ and $T[i\, .\, . \, i+m-1]$ for…

Data Structures and Algorithms · Computer Science 2024-12-20 Timothy M. Chan , Ce Jin , Virginia Vassilevska Williams , Yinzhan Xu

We study the online variant of the language distance problem for two classical formal languages, the language of palindromes and the language of squares, and for the two most fundamental distances, the Hamming distance and the edit…

Data Structures and Algorithms · Computer Science 2024-05-01 Gabriel Bathie , Tomasz Kociumaka , Tatiana Starikovskaya

We study the problem of solving semidefinite programs (SDP) in the streaming model. Specifically, $m$ constraint matrices and a target matrix $C$, all of size $n\times n$ together with a vector $b\in \mathbb{R}^m$ are streamed to us…

Data Structures and Algorithms · Computer Science 2023-09-12 Zhao Song , Mingquan Ye , Lichen Zhang
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