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This work demonstrates the execution of a novel process model for knowledge discovery and data mining for metabolomics (MeKDDaM). It aims to illustrate MeKDDaM process model applicability using four different real-world applications and to…

Quantitative Methods · Quantitative Biology 2019-07-31 Ahmed BaniMustafa , Nigel Hardy

Metabolomics is a key approach in modern functional genomics and systems biology. Due to the complexity of metabolomics data, the variety of experimental designs, and the variety of existing bioinformatics tools, providing experimenters…

The Cognitive Data Model (CDM) is proposed. A novel approach to database design, inspired by the belief that the human brain operates with a logical data model independent of its anatomical structure. The study aims to identify and…

Databases · Computer Science 2025-03-27 Dhammika Pieris

Computational engineering generates knowledge through the analysis and interpretation of research data, which is produced by computer simulation. Supercomputers produce huge amounts of research data. To address a research question, a lot of…

Information Retrieval · Computer Science 2020-07-15 Björn Schembera , Dorothea Iglezakis

Many computer models such as cellular automata and artificial neural networks have been developed and successfully applied. However, in some cases, these models might be restrictive on the possible solutions or their solutions might be…

Artificial Intelligence · Computer Science 2020-09-02 Patrik Christen , Olivier Del Fabbro

In the rapidly evolving field of metabolic engineering, the quest for efficient and precise gene target identification for metabolite production enhancement presents significant challenges. Traditional approaches, whether knowledge-based or…

Artificial Intelligence · Computer Science 2024-11-01 Kexuan Xin , Qingyun Wang , Junyu Chen , Pengfei Yu , Huimin Zhao , Heng Ji

Metabolomic data sets provide a direct read-out of cellular phenotypes and are increasingly generated to study biological questions. Our previous work revealed the potential of analyzing extracellular metabolomic data in the context of the…

Molecular Networks · Quantitative Biology 2016-06-10 Maike K. Aurich , Ronan M. T. Fleming , Ines Thiele

Process mining extends far beyond process discovery and conformance checking, and also provides techniques for bottleneck analysis and organizational mining. However, these techniques are mostly backward-looking. PMSD is a web application…

Software Engineering · Computer Science 2020-10-05 Mahsa Pourbafrani , Wil M. P. van der Aalst

In many key applications of metabolomics, such as toxicology or nutrigenomics, it is of interest to profile and detect changes in metabolic processes, usually represented in the form of pathways. As an alternative, a broader point of view…

Molecular Networks · Quantitative Biology 2014-07-17 Francesco Maiorano , Luca Ambrosino , Mario Rosario Guarracino

In the big data era, integrating diverse data modalities poses significant challenges, particularly in complex fields like healthcare. This paper introduces a new process model for multimodal Data Fusion for Data Mining, integrating…

Artificial Intelligence · Computer Science 2024-06-04 David Restrepo , Chenwei Wu , Constanza Vásquez-Venegas , Luis Filipe Nakayama , Leo Anthony Celi , Diego M López

Our goal in this dissertation is to provide tools, programming models, and system support for PIM architectures (with a focus on DRAM-based solutions), to ease the adoption of PIM in current and future systems. To this end, we make at least…

Hardware Architecture · Computer Science 2025-08-28 Geraldo F. Oliveira

This paper presents a novel approach for automated analysis of process models discovered using process mining techniques. Process mining explores underlying processes hidden in the event data generated by various devices. Our proposed…

Artificial Intelligence · Computer Science 2020-11-04 Ivona Zakarija , Frano Škopljanac-Mačina , Bruno Blašković

Accelerating finite automata processing is critical for advancing real-time analytic in pattern matching, data mining, bioinformatics, intrusion detection, and machine learning. Recent in-memory automata accelerators leveraging SRAMs and…

Hardware Architecture · Computer Science 2021-12-02 Yi Huang , Zhiyu Chen , Dai Li , Kaiyuan Yang

To retrieve and compare scientific data of simulations and experiments in materials science, data needs to be easily accessible and machine readable to qualify and quantify various materials science phenomena. The recent progress in open…

Materials Science · Physics 2025-03-25 Balduin Katzer , Steffen Klinder , Katrin Schulz

The process of knowledge discovery involves nowadays a major number of techniques. Context-Aware Data Mining (CADM) and Collaborative Data Mining (CDM) are some of the recent ones. the current research proposes a new hybrid and efficient…

Computers and Society · Computer Science 2020-07-28 Anca Avram , Oliviu Matei , Camelia Pintea , Carmen Anton

Product Data Management (PDM) aims to provide 'Systems' contributing in industries by electronically maintaining organizational data, improving data repository system, facilitating with easy access to CAD and providing additional…

Information Retrieval · Computer Science 2010-08-10 Zeeshan Ahmed , Saman Majeed , Thomas Dandekar

Process mining (PM) aims to construct, from event logs, process maps that can help discover, automate, improve, and monitor organizational processes. Robotic process automation (RPA) uses software robots to perform some tasks usually…

Software Engineering · Computer Science 2023-09-26 Najah Mary El-Gharib , Daniel Amyot

Metadata are like the steam engine of the 21st century, driving businesses and offer multiple enhancements. Nevertheless, many companies are unaware that these data can be used efficiently to improve their own operation. This is where the…

Information Retrieval · Computer Science 2021-08-17 Peter Hillmann , Erik Heiland , Andreas Karcher

Knowledge graphs (KGs) serve as powerful tools for organizing and representing structured knowledge. While their utility is widely recognized, challenges persist in their automation and completeness. Despite efforts in automation and the…

Artificial Intelligence · Computer Science 2024-05-07 Mutahira Khalid , Raihana Rahman , Asim Abbas , Sushama Kumari , Iram Wajahat , Syed Ahmad Chan Bukhari

Remarkable progress has been made in automated problem solving through societies of agents based on large language models (LLMs). Computational fluid dynamics (CFD), as a complex problem, presents unique challenges in automated simulations…

Artificial Intelligence · Computer Science 2024-08-08 Yuxuan Chen , Xu Zhu , Hua Zhou , Zhuyin Ren
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