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We consider the problem of learning causal structures in sparse high-dimensional settings that may be subject to the presence of (potentially many) unmeasured confounders, as well as selection bias. Based on the structure found in common…

Methodology · Statistics 2021-10-04 Wenyu Chen , Mathias Drton , Ali Shojaie

Sparse representation models a signal as a linear combination of a small number of dictionary atoms. As a generative model, it requires the dictionary to be highly redundant in order to ensure both a stable high sparsity level and a low…

Computer Vision and Pattern Recognition · Computer Science 2015-06-23 Xiaoxia Sun , Nasser M. Nasrabadi , Trac D. Tran

Network analysis is rapidly becoming a standard tool for studying functional magnetic resonance imaging (fMRI) data. In this framework, different brain areas are mapped to the nodes of a network, whose links depict functional dependencies…

Neurons and Cognition · Quantitative Biology 2017-05-30 Rainer Kujala , Enrico Glerean , Raj Kumar Pan , Iiro P. Jääskeläinen , Mikko Sams , Jari Saramäki

Following the general theoretical framework of VSA (Vector Symbolic Architecture), a cognitive model with the use of sparse binary hypervectors is proposed. In addition, learning algorithms are introduced to bootstrap the model from…

Artificial Intelligence · Computer Science 2023-10-31 Zhonghao Yang

Independent component analysis (ICA) is widely used to separate mixed signals and recover statistically independent components. However, in non-human primate neuroimaging studies, most ICA-recovered spatial maps are often dense. To extract…

Applications · Statistics 2025-09-23 Qiang Li , Liang Ma , Masoud Seraji , Shujian Yu , Yun Wang , Jingyu Liu , Vince D. Calhoun

Functional principal component analysis (FPCA) is an important technique for dimension reduction in functional data analysis (FDA). Classical FPCA method is based on the Karhunen-Lo\`{e}ve expansion, which assumes a linear structure of the…

Methodology · Statistics 2023-06-27 Rou Zhong , Chunming Zhang , Jingxiao Zhang

Many analyses of functional magnetic resonance imaging (fMRI) examine functional connectivity (FC), or the statistical dependencies among distant brain regions. These analyses are typically exploratory, guiding future confirmatory research.…

Applications · Statistics 2025-10-20 Kyle Stanley , Nicole Lazar , Matthew Reimherr

Functional brain network (FBN) modeling often relies on local pairwise interactions, whose limitation in capturing high-order dependencies is theoretically analyzed in this paper. Meanwhile, the computational burden and heuristic nature of…

Machine Learning · Computer Science 2025-10-13 Ling Zhan , Junjie Huang , Xiaoyao Yu , Wenyu Chen , Tao Jia

Brain network analysis based on functional Magnetic Resonance Imaging (fMRI) is pivotal for diagnosing brain disorders. Existing approaches typically rely on predefined functional sub-networks to construct sub-network associations. However,…

Machine Learning · Computer Science 2026-03-11 Jingfeng Tang , Peng Cao , Guangqi Wen , Jinzhu Yang , Xiaoli Liu , Osmar R. Zaiane

Functional neuroimaging can measure the brain?s response to an external stimulus. It is used to perform brain mapping: identifying from these observations the brain regions involved. This problem can be cast into a linear supervised…

Machine Learning · Computer Science 2012-07-03 Gael Varoquaux , Alexandre Gramfort , Bertrand Thirion

Recently, the potential of dynamic brain networks as a neuroimaging biomarkers for mental illnesses is being increasingly recognized. However, there are several unmet challenges in developing such biomarkers, including the need for methods…

Neurons and Cognition · Quantitative Biology 2019-10-10 Suprateek Kundu , Jin Ming , Jennifer Stevens

We study the problem of discovering functional dependencies (FD) from a noisy dataset. We focus on FDs that correspond to statistical dependencies in a dataset and draw connections between FD discovery and structure learning in…

Databases · Computer Science 2019-05-07 Zhihan Guo , Theodoros Rekatsinas

The study of hierarchy in networks of the human brain has been of significant interest among the researchers as numerous studies have pointed out towards a functional hierarchical organization of the human brain. This paper provides a novel…

Neurons and Cognition · Quantitative Biology 2021-03-02 Dushyant Sahoo , Theodore D. Satterthwaite , Christos Davatzikos

Sparse neural networks attract increasing interest as they exhibit comparable performance to their dense counterparts while being computationally efficient. Pruning the dense neural networks is among the most widely used methods to obtain a…

Neural and Evolutionary Computing · Computer Science 2022-11-11 Zahra Atashgahi , Joost Pieterse , Shiwei Liu , Decebal Constantin Mocanu , Raymond Veldhuis , Mykola Pechenizkiy

Advances in computational cognitive neuroimaging research are related to the availability of large amounts of labeled brain imaging data, but such data are scarce and expensive to generate. While powerful data generation mechanisms, such as…

Image and Video Processing · Electrical Eng. & Systems 2021-07-15 Badr Tajini , Hugo Richard , Bertrand Thirion

With the advances in high resolution neuroimaging, there has been a growing interest in the detection of functional brain connectivity. Complex network theory has been proposed as an attractive mathematical representation of functional…

Neural and Evolutionary Computing · Computer Science 2018-09-18 Arash Golibagh Mahyari , Selin Aviyente

Understanding the relation between cortical neuronal network structure and neuronal activity is a fundamental unresolved question in neuroscience, with implications to our understanding of the mechanism by which neuronal networks evolve…

A new method is proposed in this paper to learn overcomplete dictionary from training data samples. Differing from the current methods that enforce similar sparsity constraint on each of the input samples, the proposed method attempts to…

Data Structures and Algorithms · Computer Science 2013-05-14 Deyu Meng , Yee Leung , Qian Zhao , Zongben Xu

We present an approach to study functional segregation and integration in the living brain based on community structure decomposition determined by maximum modularity. We demonstrate this method with a network derived from functional…

Neurons and Cognition · Quantitative Biology 2007-05-23 Adam J. Schwarz , Alessandro Gozzi , Angelo Bifone

In the quest for efficient neural network models for neural data interpretation and user intent classification in brain-computer interfaces (BCIs), learning meaningful sparse representations of the underlying neural subspaces is crucial.…

Machine Learning · Computer Science 2023-12-12 Hye-Bin Shin , Kang Yin , Seong-Whan Lee