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Current approaches to genomic sequence modeling often struggle to align the inductive biases of machine learning models with the evolutionarily-informed structure of biological systems. To this end, we formulate a novel application of…

Machine Learning · Computer Science 2025-07-30 Raiyan R. Khan , Philippe Chlenski , Itsik Pe'er

In this paper, we present methods for two types of metacognitive tasks in an AI system: rapidly expanding a neural classification model to accommodate a new category of object, and recognizing when a novel object type is observed instead of…

Machine Learning · Computer Science 2022-11-10 Sadaf Ghaffari , Nikhil Krishnaswamy

Purpose: Proton magnetic resonance spectroscopic imaging ($^1$H MRSI) enables the mapping of whole-brain metabolites concentrations in-vivo. However, a long-standing problem for its clinical applicability is the metabolic quantification,…

The enhancement of spectrum efficiency and the realization of secure spectrum utilization are critically dependent on spectrum cognition. However, existing spectrum cognition methods often exhibit limited generalization and suboptimal…

Signal Processing · Electrical Eng. & Systems 2025-08-12 Chunyu Liu , Hao Zhang , Wei Wu , Fuhui Zhou , Qihui Wu , Derrick Wing Kwan Ng , Chan-Byoung Chae

In the last decade, exponential data growth supplied machine learning-based algorithms' capacity and enabled their usage in daily-life activities. Additionally, such an improvement is partially explained due to the advent of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2022-12-01 Mateus Roder , Jurandy Almeida , Gustavo H. de Rosa , Leandro A. Passos , André L. D. Rossi , João P. Papa

One essential task in information extraction from the medical corpus is drug name recognition. Compared with text sources come from other domains, the medical text is special and has unique characteristics. In addition, the medical text…

Computation and Language · Computer Science 2016-10-07 Sadikin Mujiono , Mohamad Ivan Fanany , Chan Basaruddin

We present data driven deep learning models for forecasting and monitoring amine emissions and key performance parameters in amine-based post-combustion carbon capture systems. Using operational data from the CESAR1 solvent campaign at…

Machine Learning · Computer Science 2025-09-08 Lokendra Poudel , David Tincher , Duy-Nhat Phan , Rahul Bhowmik

The molecular simulations solve the equation of motion of molecular systems, making 3D shapes of molecules four-dimensional by adding the time coordinate. These methods have a great potential in drug discovery because they can realistically…

Biomolecules · Quantitative Biology 2023-01-19 Dalibor Trapl , Vojtěch Spiwok

Untargeted metabolomic profiling through liquid chromatography-mass spectrometry (LC-MS) measures a vast array of metabolites within biospecimens, advancing drug development, disease diagnosis, and risk prediction. However, the low…

Quantitative Methods · Quantitative Biology 2024-05-27 Marie Breeur , George Stepaniants , Pekka Keski-Rahkonen , Philippe Rigollet , Vivian Viallon

Knowledge distillation allows transferring knowledge from a pre-trained model to another. However, it suffers from limitations, and constraints related to the two models need to be architecturally similar. Knowledge distillation addresses…

Image and Video Processing · Electrical Eng. & Systems 2020-09-03 Sajjad Abbasi , Mohsen Hajabdollahi , Pejman Khadivi , Nader Karimi , Roshanak Roshandel , Shahram Shirani , Shadrokh Samavi

Mass spectrometry is the dominant technology in the field of proteomics, enabling high-throughput analysis of the protein content of complex biological samples. Due to the complexity of the instrumentation and resulting data, sophisticated…

Mass spectrometry-based metabolomics generates complex, high-dimensional data that holds vast potential for biological discovery but remains difficult to integrate and interpret. Knowledge graphs (KGs) unify this heterogeneous information…

Product Data Management (PDM) aims to provide 'Systems' contributing in industries by electronically maintaining organizational data, improving data repository system, facilitating with easy access to CAD and providing additional…

Information Retrieval · Computer Science 2010-08-10 Zeeshan Ahmed , Saman Majeed , Thomas Dandekar

In recent years, human activity recognition has garnered considerable attention both in industrial and academic research because of the wide deployment of sensors, such as accelerometers and gyroscopes, in products such as smartphones and…

Signal Processing · Electrical Eng. & Systems 2021-03-08 Bolu Oluwalade , Sunil Neela , Judy Wawira , Tobiloba Adejumo , Saptarshi Purkayastha

We propose a novel approach to the estimation of multiple Graphical Models to analyse temporal patterns of association among a set of metabolites over different groups of patients. Our motivating application is the Southall And Brent…

Recently, action recognition has been dominated by transformer-based methods, thanks to their spatiotemporal contextual aggregation capacities. However, despite the significant progress achieved on scene-related datasets, they do not…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Peiqin Zhuang , Lei Bai , Yichao Wu , Ding Liang , Luping Zhou , Yali Wang , Wanli Ouyang

Human activity recognition, facilitated by smart devices, has recently garnered significant attention. Deep learning algorithms have become pivotal in daily activities, sports, and healthcare. Nevertheless, addressing the challenge of…

Human-Computer Interaction · Computer Science 2024-11-19 Nazanin Sedaghati , Masoud Kargar , Sina Abbaskhani

Data curation plays a crucial role in training powerful Visual Language Models (VLMs). In this work, we introduce the concept of Data Metabolism and present our data-centric framework to build VLMs throughout the development lifecycle.…

Computation and Language · Computer Science 2025-04-18 Jingyuan Zhang , Hongzhi Zhang , Zhou Haonan , Chenxi Sun , Xingguang ji , Jiakang Wang , Fanheng Kong , Yahui Liu , Qi Wang , Fuzheng Zhang

Mobile behavioral biometrics have become a popular topic of research, reaching promising results in terms of authentication, exploiting a multimodal combination of touchscreen and background sensor data. However, there is no way of knowing…

Computer Vision and Pattern Recognition · Computer Science 2022-10-05 Giuseppe Stragapede , Ruben Vera-Rodriguez , Ruben Tolosana , Aythami Morales

Stochastic Process Model has many applications in analysis of longitudinal biodemographic data. Such data contain various physiological variables (sometimes known as covariates). It also can potentially contain genetic information available…

Populations and Evolution · Quantitative Biology 2016-05-31 Ilya Zhbannikov , Konstantin Arbeev , Anatoliy Yashin
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