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Quantitative proteomics plays a central role in uncovering regulatory mechanisms, identifying disease biomarkers, and guiding the development of precision therapies. These insights are often obtained through complex Bayesian models, whose…

Quantitative Methods · Quantitative Biology 2025-09-11 Matthew Carter , Lee Devlin , Alexander Philips , Edward Pyzer-Knapp , Paul Spirakis , Simon Maskell

For the self-consistent description of various plasma sources operated in the low-pressure (nonlocal, kinetic) regime, the Particle-In-Cell simulation approach, combined with the Monte Carlo treatment of collision processes (PIC/MCC), has…

This position paper summarizes a recently developed research program focused on inference in the context of data centric science and engineering applications, and forecasts its trajectory forward over the next decade. Often one endeavours…

Computation · Statistics 2021-12-06 Ajay Jasra , Kody J. H. Law , Alexander Tarakanov , Fangyuan Yu

The generalized linear mixed model (GLMM) is widely used for analyzing correlated data, particularly in large-scale biomedical and social science applications. Scalable Bayesian inference for GLMMs is challenging because the marginal…

Computation · Statistics 2026-01-07 Samuel I. Berchuck , Youngsoo Baek , Felipe A. Medeiros , Andrea Agazzi

Large Language Models (LLMs) have emerged as powerful tools for software development tasks such as code completion, translation, and optimization. However, their ability to generate efficient and correct code, particularly in complex…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-19 Bowen Cui , Tejas Ramesh , Oscar Hernandez , Keren Zhou

Understanding the reliability of large language models (LLMs) has recently garnered significant attention. Given LLMs' propensity to hallucinate, as well as their high sensitivity to prompt design, it is already challenging to predict the…

Machine Learning · Computer Science 2025-06-10 Michael J. Zellinger , Matt Thomson

As the Large Hadron Collider (LHC) continues its upward progression in energy and luminosity towards the planned High-Luminosity LHC (HL-LHC) in 2025, the challenges of the experiments in processing increasingly complex events will also…

Instrumentation and Detectors · Physics 2022-10-05 Paul Lujan , Valerie Halyo

Large-scale simulations of plasmas are essential for advancing our understanding of fusion devices, space, and astrophysical systems. Particle-in-Cell (PIC) codes have demonstrated their success in simulating numerous plasma phenomena on…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-05 Steven W. D. Chien , Jonas Nylund , Gabriel Bengtsson , Ivy B. Peng , Artur Podobas , Stefano Markidis

Deep learning-based approaches, particularly those leveraging pre-trained language models (PLMs), have shown promise in automated software vulnerability detection. However, existing methods are predominantly limited to specific programming…

Software Engineering · Computer Science 2025-05-13 Junji Yu , Honglin Shu , Michael Fu , Dong Wang , Chakkrit Tantithamthavorn , Yasutaka Kamei , Junjie Chen

Large language models (LLMs) have demonstrated remarkable potential across numerous applications and have shown an emergent ability to tackle complex reasoning tasks, such as mathematical computations. However, even for the simplest…

Computation and Language · Computer Science 2024-09-04 Wei Zhang , Chaoqun Wan , Yonggang Zhang , Yiu-ming Cheung , Xinmei Tian , Xu Shen , Jieping Ye

The family of Multiscale Hybrid-Mixed (MHM) finite element methods has received considerable attention from the mathematics and engineering community in the last few years. The MHM methods allow solving highly heterogeneous problems on…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-03-31 Antonio Tadeu A. Gomes , Weslley S. Pereira , Frederic Valentin , Diego Paredes

Probabilistic programming methods have revolutionised Bayesian inference, making it easier than ever for practitioners to perform Markov-chain-Monte-Carlo sampling from non-conjugate posterior distributions. Here we focus on Stan, arguably…

Computation · Statistics 2025-02-10 Clemens Pichler , Jack Jewson , Alejandra Avalos-Pacheco

Modern scientific research increasingly depends on High-Performance Computing (HPC) infrastructures, yet many researchers face significant operational barriers when interacting with cluster environments, job schedulers, GPU resources, and…

Machine Learning · Computer Science 2026-05-19 Nourin Shahin , Izzat Alsmadi

In recent years, the size of pre-trained language models (PLMs) has grown by leaps and bounds. However, efficiency issues of these large-scale PLMs limit their utilization in real-world scenarios. We present a suite of cost-effective…

Large language models (LLMs) offer remarkable capabilities, yet their high inference costs restrict wider adoption. While increasing parameter counts improves accuracy, it also broadens the gap between state-of-the-art capabilities and…

Training large language models (LLMs) from scratch can yield models with unique functionalities and strengths, but it is costly and often leads to redundant capabilities. A more cost-effective alternative is to fuse existing pre-trained…

Computation and Language · Computer Science 2025-09-23 Runjia Zeng , James Chenhao Liang , Cheng Han , Zhiwen Cao , Jiahao Liu , Xiaojun Quan , Yingjie Victor Chen , Lifu Huang , Tong Geng , Qifan Wang , Dongfang Liu

Traditional heterogeneous parallel algorithms, designed for heterogeneous clusters of workstations, are based on the assumption that the absolute speed of the processors does not depend on the size of the computational task. This assumption…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-09-15 Alexey Lastovetsky , Ravi Reddy , Vladimir Rychkov , David Clarke

Bayesian reasoning is a powerful mechanism for probabilistic inference in smart edge-devices. During such inferences, a low-precision arithmetic representation can enable improved energy efficiency. However, its impact on inference accuracy…

Hardware Architecture · Computer Science 2021-03-02 Nimish Shah , Laura I. Galindez Olascoaga , Wannes Meert , Marian Verhelst

Simulations with high accuracy are an essential part of scientific research to accelerate the innovation process. They are especially useful for finding novel approaches or optimizing existing methods. Today, powerful software tools are…

Medical Physics · Physics 2022-08-31 Patrick Vogel , Martin A. Rückert , Thomas Kampf , Volker C. Behr

The advent of ultra-low-bit LLM models (1/1.58/2-bit), which match the perplexity and end-task performance of their full-precision counterparts using the same model size, is ushering in a new era of LLM inference for resource-constrained…

Artificial Intelligence · Computer Science 2026-01-27 Evangelos Georganas , Dhiraj Kalamkar , Alexander Heinecke