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In this paper we combine many of the standard and more recent algebraic techniques for testing isomorphism of finite groups (GpI) with combinatorial techniques that have typically been applied to Graph Isomorphism. In particular, we show…

Computational Complexity · Computer Science 2019-05-08 Peter A. Brooksbank , Joshua A. Grochow , Yinan Li , Youming Qiao , James B. Wilson

Two graphs are homomorphism indistinguishable over a graph class $\mathcal{F}$, denoted by $G \equiv_{\mathcal{F}} H$, if $\operatorname{hom}(F,G) = \operatorname{hom}(F,H)$ for all $F \in \mathcal{F}$ where $\operatorname{hom}(F,G)$…

Combinatorics · Mathematics 2023-07-11 Daniel Neuen

Subgraph counting is a fundamental task for analyzing structural patterns in graph-structured data, with important applications in domains such as computational biology and social network analysis, where recurring motifs reveal functional…

Machine Learning · Computer Science 2025-12-02 Shubhajit Roy , Shrutimoy Das , Binita Maity , Anant Kumar , Anirban Dasgupta

This paper presents the Persistent Weisfeiler-Lehman Random walk scheme (abbreviated as PWLR) for graph representations, a novel mathematical framework which produces a collection of explainable low-dimensional representations of graphs…

Machine Learning · Computer Science 2022-08-30 Sun Woo Park , Yun Young Choi , Dosang Joe , U Jin Choi , Youngho Woo

While Graph Neural Networks (GNNs) have achieved remarkable results in a variety of applications, recent studies exposed important shortcomings in their ability to capture the structure of the underlying graph. It has been shown that the…

Machine Learning · Computer Science 2023-09-26 Giorgos Bouritsas , Fabrizio Frasca , Stefanos Zafeiriou , Michael M. Bronstein

We present a new algorithm for finding large independent sets in $3$-colorable graphs with small $1$-sided threshold rank. Specifically, given an $n$-vertex $3$-colorable graph whose uniform random walk matrix has at most $r$ eigenvalues…

Data Structures and Algorithms · Computer Science 2025-08-06 Jun-Ting Hsieh

The expressive power of graph neural network formalisms is commonly measured by their ability to distinguish graphs. For many formalisms, the k-dimensional Weisfeiler-Leman (k-WL) graph isomorphism test is used as a yardstick. In this paper…

Machine Learning · Computer Science 2020-07-24 Floris Geerts

Graphs with a simple spectrum admit cubic-time isomorphism testing, yet we prove that for every natural number $k$, the $k$-Weisfeiler-Leman ($k$-WL) test cannot distinguish all non-isomorphic graphs with a simple spectrum. As the WL…

Machine Learning · Computer Science 2026-05-25 Snir Hordan , Nadav Dym , Tim Seppelt

In this paper we resolve the complexity of the isomorphism problem on all but finitely many of the graph classes characterized by two forbidden induced subgraphs. To this end we develop new techniques applicable for the structural and…

Discrete Mathematics · Computer Science 2014-11-10 Pascal Schweitzer

Graph neural network architectures aligned with the $k$-dimensional Weisfeiler--Leman ($k$-WL) hierarchy offer theoretically well-understood expressive power. However, these architectures often fail to deliver state-of-the-art predictive…

Machine Learning · Computer Science 2024-06-06 Luis Müller , Christopher Morris

Color refinement is a classical technique used to show that two given graphs G and H are non-isomorphic; it is very efficient, although it does not succeed on all graphs. We call a graph G amenable to color refinement if it succeeds in…

Computational Complexity · Computer Science 2015-05-05 V. Arvind , Johannes Köbler , Gaurav Rattan , Oleg Verbitsky

We study free scalar field theory on a graph, which gives rise to a modified version of discrete Green's function on a graph studied in \cite{CY}. We show that this gives rise to a graph invariant, which is closely related to the 2-dim…

Combinatorics · Mathematics 2015-06-18 An Huang , Shing-Tung Yau , Mei-Heng Yueh

The invariance to permutations of the adjacency matrix, i.e., graph isomorphism, is an overarching requirement for Graph Neural Networks (GNNs). Conventionally, this prerequisite can be satisfied by the invariant operations over node…

Machine Learning · Computer Science 2022-05-31 Zhongyu Huang , Yingheng Wang , Chaozhuo Li , Huiguang He

We prove that the number of iterations taken by the Weisfeiler-Leman algorithm for configurations coming from Schreier graphs is closely linked to the diameter of the graphs themselves: an upper bound is found for general Schreier graphs,…

Combinatorics · Mathematics 2019-11-19 Daniele Dona

As a classical approach on graph learning, the propagation-aggregation methodology is widely exploited by many of Graph Neural Networks (GNNs), wherein the representation of a node is updated by aggregating representations from itself and…

Machine Learning · Computer Science 2025-12-08 Xiao Yue , Bo Liu , Feng Zhang , Guangzhi Qu

A distinguishing coloring of a graph is a vertex coloring such that only the identity automorphism of the graph preserves the coloring. A 2-distinguishable graph is a graph which can be distinguished using 2 colors. The cost $\rho(G)$ of a…

Combinatorics · Mathematics 2025-06-04 Alexa Gopaulsingh , Zalán Molnár , Amitayu Banerjee

We show that feasibility of the $t^\text{th}$ level of the Lasserre semidefinite programming hierarchy for graph isomorphism can be expressed as a homomorphism indistinguishability relation. In other words, we define a class $\mathcal{L}_t$…

Combinatorics · Mathematics 2024-09-11 David E. Roberson , Tim Seppelt

Graph isomorphism testing is usually approached via the comparison of graph invariants. Two popular alternatives that offer a good trade-off between expressive power and computational efficiency are combinatorial (i.e., obtained via the…

Machine Learning · Computer Science 2022-03-03 Or Feldman , Amit Boyarski , Shai Feldman , Dani Kogan , Avi Mendelson , Chaim Baskin

The majority of popular graph kernels is based on the concept of Haussler's $\mathcal{R}$-convolution kernel and defines graph similarities in terms of mutual substructures. In this work, we enrich these similarity measures by considering…

Machine Learning · Computer Science 2021-10-25 Till Hendrik Schulz , Pascal Welke , Stefan Wrobel

Colour refinement is a basic algorithmic routine for graph isomorphism testing, appearing as a subroutine in almost all practical isomorphism solvers. It partitions the vertices of a graph into "colour classes" in such a way that all…

Data Structures and Algorithms · Computer Science 2014-05-01 Martin Grohe , Kristian Kersting , Martin Mladenov , Erkal Selman