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The predictive accuracy of Machine Learning (ML) models of molecular properties depends on the choice of the molecular representation. Based on the postulates of quantum mechanics, we introduce a hierarchy of representations which meet…

Chemical Physics · Physics 2016-11-23 Bing Huang , O. Anatole von Lilienfeld

Simulating interactions between non-spherical colloidal particles is computationally challenging due to the complex dependency of forces and energies on their geometry. We introduce and evaluate both descriptor-based and end-to-end models…

Soft Condensed Matter · Physics 2025-09-22 B. Rusen Argun , Antonia Statt

Motivation: Sequence mapping is the cornerstone of modern genomics. However, most existing sequence mapping algorithms are insufficiently general. Results: We introduce context schemes: a method that allows the unambiguous recognition of a…

Genomics · Quantitative Biology 2015-08-28 Adam Novak , Yohei Rosen , David Haussler , Benedict Paten

Machine learning interatomic potentials (MLIPs) have introduced a new paradigm for atomic simulations. Recent advancements have seen the emergence of universal MLIPs (uMLIPs) that are pre-trained on diverse materials datasets, providing…

Machine Learning Interatomic Potentials play a fundamental role in computational chemistry and materials science, enabling applications from molecular dynamics simulations to drug design and materials discovery. While recent approaches can…

Machine Learning · Computer Science 2026-05-12 Amir Masoud Nourollah , Irtaza Khalid , Stefano Leoni , Steven Schockaert

We present a descriptor, called fully convolutional self-similarity (FCSS), for dense semantic correspondence. To robustly match points among different instances within the same object class, we formulate FCSS using local self-similarity…

Computer Vision and Pattern Recognition · Computer Science 2017-02-06 Seungryong Kim , Dongbo Min , Bumsub Ham , Sangryul Jeon , Stephen Lin , Kwanghoon Sohn

The rapid expansion in the size of new datasets has created a need for fast and efficient parameter-learning techniques. Compressive learning is a framework that enables efficient processing by using random, non-linear features to project…

Machine Learning · Computer Science 2025-08-18 Daniel Mas Montserrat , David Bonet , Maria Perera , Xavier Giró-i-Nieto , Alexander G. Ioannidis

Recently supervised machine learning has been ascending in providing new predictive approaches for chemical, biological and materials sciences applications. In this Perspective we focus on the interplay of machine learning algorithm with…

Machine-learning models based on a point-cloud representation of a physical object are ubiquitous in scientific applications and particularly well-suited to the atomic-scale description of molecules and materials. Among the many different…

Chemical Physics · Physics 2023-03-08 Filippo Bigi , Sergey N. Pozdnyakov , Michele Ceriotti

Machine learning can reveal new insights into X-ray spectroscopy of liquids when the local atomistic environment is presented to the model in a suitable way. Many unique structural descriptor families have been developed for this purpose.…

Chemical Physics · Physics 2024-08-26 E. A. Eronen , A. Vladyka , Ch. J. Sahle , J. Niskanen

In spatial statistics and machine learning, the kernel matrix plays a pivotal role in prediction, classification, and maximum likelihood estimation. A thorough examination reveals that for large sample sizes, the kernel matrix becomes…

Machine Learning · Statistics 2023-11-07 Hao Zhang

We show how to speed up global optimization of molecular structures using machine learning methods. To represent the molecular structures we introduce the auto-bag feature vector that combines: i) a local feature vector for each atom, ii)…

Computational Physics · Physics 2018-10-10 Søren A. Meldgaard , Esben L. Kolsbjerg , Bjørk Hammer

In order to operate in human environments, a robot's semantic perception has to overcome open-world challenges such as novel objects and domain gaps. Autonomous deployment to such environments therefore requires robots to update their…

Robotics · Computer Science 2022-09-21 Hermann Blum , Marcus G. Müller , Abel Gawel , Roland Siegwart , Cesar Cadena

Comprehensive scene understanding is a critical enabler of robot autonomy. Semantic segmentation is one of the key scene understanding tasks which is pivotal for several robotics applications including autonomous driving, domestic service…

Robotics · Computer Science 2024-01-17 Juana Valeria Hurtado , Abhinav Valada

The stability of chemically complex nanoparticles is governed by an immense configurational space arising from heterogeneous local atomic environments across surface and interior regions. Efficiently identifying low-energy configurations…

Efficient optimization of molecules with targeted properties remains a significant challenge due to the vast size and discrete nature of chemical compound space. Conventional machine-learning-based optimization approaches typically require…

Chemical Physics · Physics 2026-03-04 Yun-Wen Mao , Roman V. Krems

This work studies Semantic Scene Completion which aims to predict a 3D semantic segmentation of our surroundings, even though some areas are occluded. For this we construct a Bayesian Convolutional Neural Network (BCNN), which is not only…

Computer Vision and Pattern Recognition · Computer Science 2020-10-19 David Gillsjö , Kalle Åström

When reading a text, it is common to become stuck on unfamiliar words and phrases, such as polysemous words with novel senses, rarely used idioms, internet slang, or emerging entities. If we humans cannot figure out the meaning of those…

Computation and Language · Computer Science 2019-04-11 Shonosuke Ishiwatari , Hiroaki Hayashi , Naoki Yoshinaga , Graham Neubig , Shoetsu Sato , Masashi Toyoda , Masaru Kitsuregawa

With the aim to improve the performance of feature matching, we present an unsupervised approach to fuse various local descriptors in the space of homographies. Inspired by the observation that the homographies of correct feature…

Computer Vision and Pattern Recognition · Computer Science 2014-12-16 Yuan-Ting Hu , Yen-Yu Lin , Hsin-Yi Chen , Kuang-Jui Hsu , Bing-Yu Chen

Recent years have witnessed the fast development of machine learning potentials (MLPs) and their widespread applications in chemistry, physics, and material science. By fitting discrete ab initio data faithfully to continuous and…

Chemical Physics · Physics 2025-05-13 Junfan Xia , Yaolong Zhang , Bin Jiang