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This paper proposes new search algorithms for counterfactual explanations based upon mixed integer programming. We are concerned with complex data in which variables may take any value from a contiguous range or an additional set of…

Machine Learning · Computer Science 2019-01-16 Chris Russell

Integrated information theory is a mathematical, quantifiable theory of conscious experience. The linchpin of this theory, the $\phi$ measure, quantifies a system's irreducibility to disjoint parts. Purely as a measure of irreducibility, we…

Information Theory · Computer Science 2014-10-10 Virgil Griffith

This article introduces the Python package gcimpute for missing data imputation. gcimpute can impute missing data with many different variable types, including continuous, binary, ordinal, count, and truncated values, by modeling data as…

Methodology · Statistics 2022-03-11 Yuxuan Zhao , Madeleine Udell

The Information bottleneck method is an unsupervised non-parametric data organization technique. Given a joint distribution P(A,B), this method constructs a new variable T that extracts partitions, or clusters, over the values of A that are…

Machine Learning · Computer Science 2013-01-14 Nir Friedman , Ori Mosenzon , Noam Slonim , Naftali Tishby

In these lecture notes, a selection of frequently required statistical tools will be introduced and illustrated. They allow to post-process data that stem from, e.g., large-scale numerical simulations (aka sequence of random experiments).…

Data Analysis, Statistics and Probability · Physics 2012-07-26 O. Melchert

Information inequalities govern the ultimate limitations in information theory and as such play an pivotal role in characterizing what values the entropy of multipartite states can take. Proving an information inequality, however, quickly…

Quantum Physics · Physics 2025-10-23 Shao-Lun Huang , Tobias Rippchen , Mario Berta

Information theory is a mathematical theory of learning with deep connections with topics as diverse as artificial intelligence, statistical physics, and biological evolution. Many primers on information theory paint a broad picture with…

Information Theory · Computer Science 2019-03-26 Philip Chodrow

Integrated Information Theory (IIT) is a prominent theory of consciousness that has at its centre measures that quantify the extent to which a system generates more information than the sum of its parts. While several candidate measures of…

Neurons and Cognition · Quantitative Biology 2019-01-30 Pedro A. M. Mediano , Anil K. Seth , Adam B. Barrett

This book is intended for teaching Signal Analysis methods and Inverse Problems theory. It is completely open access and will remain free. It is currently illustrated with examples that we have actually encountered in geophysics, but will…

One of the greatest research challenges of this century is to understand the neural basis for how behavior emerges in brain-body-environment systems. To this end, research has flourished along several directions but have predominantly…

Neurons and Cognition · Quantitative Biology 2021-06-10 Madhavun Candadai

Integrated information theory (IIT) has established itself as one of the leading theories for the study of consciousness. IIT essentially proposes that quantitative consciousness is identical to maximally integrated conceptual information,…

Neurons and Cognition · Quantitative Biology 2017-03-06 Stephan Krohn , Dirk Ostwald

The application of information theory approach (both in its extensive and nonextensive versions) to high energy multiparticle processes is discussed and confronted with experimental data on e+e- annihilation processes, pp and \bar{p}p…

High Energy Physics - Phenomenology · Physics 2014-11-17 F. S. Navarra , O. V. Utyuzh , G. Wilk , Z. Wlodarczyk

We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various…

We propose a new interpretation of measures of information and disorder by connecting these concepts to group theory in a new way. Entropy and group theory are connected here by their common relation to sets of permutations. A combinatorial…

Information Theory · Computer Science 2019-11-25 David J. Galas

Understanding astrophysical and cosmological processes can be challenging due to their complexity and lack of intuitive analogies. To address this, we present \texttt{AstronomyCalc}, a Python package specifically designed to aid…

Physics Education · Physics 2025-11-26 Sambit K. Giri

This paper introduces several fundamental concepts in information theory from the perspective of their origins in engineering. Understanding such concepts is important in neuroscience for two reasons. Simply applying formulae from…

Information Theory · Computer Science 2016-03-29 Mark D. McDonnell , Shiro Ikeda , Jonathan H. Manton

We define the concept of dependence among multiple variables using maximum entropy techniques and introduce a graphical notation to denote the dependencies. Direct inference of information theoretic quantities from data uncovers…

Quantitative Methods · Quantitative Biology 2007-07-13 Ilya Nemenman

Information theory is a powerful framework for quantifying complexity, uncertainty, and dynamical structure in time-series data, with widespread applicability across disciplines such as physics, finance, and neuroscience. However, the…

Information Theory · Computer Science 2026-01-26 Annie G. Bryant , Oliver M. Cliff , James M. Shine , Ben D. Fulcher , Joseph T. Lizier

Originally conceived as a theory of consciousness, integrated information theory (IIT) provides a theoretical framework intended to characterize the compositional causal information that a system, in its current state, specifies about…

Quantum Physics · Physics 2023-03-22 Larissa Albantakis , Robert Prentner , Ian Durham

Integrated Information Theory is one of the leading models of consciousness. It aims to describe both the quality and quantity of the conscious experience of a physical system, such as the brain, in a particular state. In this contribution,…

Neurons and Cognition · Quantitative Biology 2020-02-19 Johannes Kleiner , Sean Tull