Related papers: Circular Pattern Matching with $k$ Mismatches

The classical pattern matching paradigm is that of seeking occurrences of one string - the pattern, in another - the text, where both strings are drawn from an alphabet set $\Sigma$. Assuming the text length is $n$ and the pattern length is…

Time series are ubiquitous in domains ranging from medicine to marketing and finance. Frequent Pattern Mining (FPM) from a time series has thus received much attention. Recently, it has been studied under the order-preserving (OP) matching…

We study the internal dictionary matching (IDM) problem where a dictionary $\mathcal{D}$ containing $d$ substrings of a text $T$ is given, and each query concerns the occurrences of patterns in $\mathcal{D}$ in another substring of $T$. We…

Given an indeterminate string pattern $p$ and an indeterminate string text $t$, the problem of order-preserving pattern matching with character uncertainties ($\mu$OPPM) is to find all substrings of $t$ that satisfy one of the possible…

Confidence intervals are a standard technique for analyzing data. When applied to time series, confidence intervals are computed for each time point separately. Alternatively, we can compute confidence bands, where we are required to find…

In the area of parameterized complexity, to cope with NP-Hard problems, we introduce a parameter k besides the input size n, and we aim to design algorithms (called FPT algorithms) that run in O(f(k)n^d) time for some function f(k) and…

In the classical longest palindromic substring (LPS) problem, we are given a string $S$ of length $n$, and the task is to output a longest palindromic substring in $S$. Gilbert, Hajiaghayi, Saleh, and Seddighin [SPAA 2023] showed how to…

We study the $k$-center problem in the context of individual fairness. Let $P$ be a set of $n$ points in a metric space and $r_x$ be the distance between $x \in P$ and its $\lceil n/k \rceil$-th nearest neighbor. The problem asks to…

The metric $k$-median problem is a textbook clustering problem. As input, we are given a metric space $V$ of size $n$ and an integer $k$, and our task is to find a subset $S \subseteq V$ of at most $k$ `centers' that minimizes the total…

We consider the problem of finding the matching map between two sets of $d$-dimensional noisy feature-vectors. The distinctive feature of our setting is that we do not assume that all the vectors of the first set have their corresponding…

Given a set of $n$ circular arcs of the same radius in the plane, we consider the problem of computing the number of intersections among the arcs. The problem was studied before and the previously best algorithm solves the problem in…

We study pattern matching problems on two major representations of uncertain sequences used in molecular biology: weighted sequences (also known as position weight matrices, PWM) and profiles (i.e., scoring matrices). In the simple version,…

In this paper, we introduce and study the Non-Uniform k-Center problem (NUkC). Given a finite metric space $(X,d)$ and a collection of balls of radii $\{r_1\geq \cdots \ge r_k\}$, the NUkC problem is to find a placement of their centers on…

In this paper, we consider two types of robust models of the $k$-median/$k$-means problems: the outlier-version ($k$-MedO/$k$-MeaO) and the penalty-version ($k$-MedP/$k$-MeaP), in which we can mark some points as outliers and discard them.…

Given a set of $n$ weighted points on the $x$-$y$ plane, we want to find a step function consisting of $k$ horizontal steps such that the maximum vertical weighted distance from any point to a step is minimized. We solve this problem in…

The k-forest problem is a common generalization of both the k-MST and the dense-$k$-subgraph problems. Formally, given a metric space on $n$ vertices $V$, with $m$ demand pairs $\subseteq V \times V$ and a ``target'' $k\le m$, the goal is…

We revisit Matrix Balancing, a pre-conditioning task used ubiquitously for computing eigenvalues and matrix exponentials. Since 1960, Osborne's algorithm has been the practitioners' algorithm of choice and is now implemented in most…

Let ${\cal{D}}$ = $\{d_1, d_2, d_3, ..., d_D\}$ be a given set of $D$ (string) documents of total length $n$. The top-$k$ document retrieval problem is to index $\cal{D}$ such that when a pattern $P$ of length $p$, and a parameter $k$ come…

We present a practical algorithm for the cyclic longest common subsequence (CLCS) problem that runs in O(mn) time, where m and n are the lengths of the two input strings. While this is not necessarily an asymptotic improvement over the…

We revisit the complexity of building, given a two-dimensional string of size $n$, an indexing structure that allows locating all $k$ occurrences of a two-dimensional pattern of size $m$. While a structure of size $\mathcal{O}(n)$ with…