English
Related papers

Related papers: Approximate Similarity Search Under Edit Distance …

200 papers

In this paper we study the problem of finding the approximate nearest neighbor of a query point in the high dimensional space, focusing on the Euclidean space. The earlier approaches use locality-preserving hash functions (that tend to map…

Data Structures and Algorithms · Computer Science 2007-05-23 Rina Panigrahy

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

Data Structures and Algorithms · Computer Science 2018-05-08 Moses Charikar , Ofir Geri , Michael P. Kim , William Kuszmaul

This paper is concerned with practical implementations of approximate string dictionaries that allow edit errors. In this problem, we have as input a dictionary $D$ of $d$ strings of total length $n$ over an alphabet of size $\sigma$. Given…

Data Structures and Algorithms · Computer Science 2014-08-26 Ibrahim Chegrane , Djamal Belazzougui

We study the fundamental problem of approximating the edit distance of two strings. After an extensive line of research led to the development of a constant-factor approximation algorithm in almost-linear time, recent years have witnessed a…

Data Structures and Algorithms · Computer Science 2023-12-05 Karl Bringmann , Alejandro Cassis , Nick Fischer , Tomasz Kociumaka

The $c$-approximate Near Neighbor problem in high dimensional spaces has been mainly addressed by Locality Sensitive Hashing (LSH), which offers polynomial dependence on the dimension, query time sublinear in the size of the dataset, and…

Computational Geometry · Computer Science 2016-12-23 Georgia Avarikioti , Ioannis Z. Emiris , Ioannis Psarros , Georgios Samaras

Edit distance is an important measure of string similarity. It counts the number of insertions, deletions and substitutions one has to make to a string $x$ to get a string $y$. In this paper we design an almost linear-size sketching scheme…

Data Structures and Algorithms · Computer Science 2024-06-18 Michal Koucký , Michael Saks

We investigate the problem of finding reverse nearest neighbors efficiently. Although provably good solutions exist for this problem in low or fixed dimensions, to this date the methods proposed in high dimensions are mostly heuristic. We…

Computational Geometry · Computer Science 2010-11-24 David Arthur , Steve Y. Oudot

In a way similar to the string-to-string correction problem we address time series similarity in the light of a time-series-to-time-series-correction problem for which the similarity between two time series is measured as the minimum cost…

Information Retrieval · Computer Science 2008-12-28 Pierre-François Marteau

In many applications, it is necessary to determine the similarity of two strings. A widely-used notion of string similarity is the edit distance: the minimum number of insertions, deletions, and substitutions required to transform one…

cmp-lg · Computer Science 2008-02-03 Eric Sven Ristad , Peter N. Yianilos

We present a new efficient method for approximate search in electronic lexica. Given an input string (the pattern) and a similarity threshold, the algorithm retrieves all entries of the lexicon that are sufficiently similar to the pattern.…

Computation and Language · Computer Science 2015-12-04 Stefan Gerdjikov , Stoyan Mihov , Petar Mitankin , Klaus U. Schulz

Most natural language processing tasks can be formulated as the approximated nearest neighbor search problem, such as word analogy, document similarity, machine translation. Take the question-answering task as an example, given a question…

Artificial Intelligence · Computer Science 2017-08-28 Jing Wang

Conformance checking techniques let us find out to what degree a process model and real execution data correspond to each other. In recent years, alignments have proven extremely useful in calculating conformance statistics. Most techniques…

Artificial Intelligence · Computer Science 2019-12-12 Mohammadreza Fani Sani , Sebastiaan J. van Zelst , Wil M. P. van der Aalst

We consider an efficient two-party protocol for securely computing the similarity of strings w.r.t. an extended edit distance measure. Here, two parties possessing strings $x$ and $y$, respectively, want to jointly compute an approximate…

Cryptography and Security · Computer Science 2019-12-02 Yohei Yoshimoto , Masaharu Kataoka , Yoshimasa Takabatake , Tomohiro I , Kilho Shin , Hiroshi Sakamoto

We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…

Data Structures and Algorithms · Computer Science 2020-01-03 Timothy M. Chan , Shay Golan , Tomasz Kociumaka , Tsvi Kopelowitz , Ely Porat

The approximate period recovery problem asks to compute all $\textit{approximate word-periods}$ of a given word $S$ of length $n$: all primitive words $P$ ($|P|=p$) which have a periodic extension at edit distance smaller than $\tau_p$ from…

Data Structures and Algorithms · Computer Science 2018-07-30 Tomasz Kociumaka , Jakub Radoszewski , Wojciech Rytter , Juliusz Straszyński , Tomasz Waleń , Wiktor Zuba

Fast approximate nearest neighbor (NN) search in large databases is becoming popular. Several powerful learning-based formulations have been proposed recently. However, not much attention has been paid to a more fundamental question: how…

Machine Learning · Computer Science 2012-07-03 Junfeng He , Sanjiv Kumar , Shih-Fu Chang

We study the problem of edit similarity joins, where given a set of strings and a threshold value $K$, we want to output all pairs of strings whose edit distances are at most $K$. Edit similarity join is a fundamental problem in data…

Databases · Computer Science 2017-10-10 Haoyu Zhang , Qin Zhang

Locality Sensitive Hashing (LSH) is an effective method to index a set of points such that we can efficiently find the nearest neighbors of a query point. We extend this method to our novel Set-query LSH (SLSH), such that it can find the…

Data Structures and Algorithms · Computer Science 2020-04-23 Haim Kaplan , Jay Tenenbaum

The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming solution for this problem computes the edit-distance between…

Data Structures and Algorithms · Computer Science 2016-10-05 Danny Hermelin , Gad M. Landau , Shir Landau , Oren Weimann

Edit distance is a measure of similarity of two strings based on the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. The edit distance can be computed exactly using a…

Data Structures and Algorithms · Computer Science 2021-02-17 Diptarka Chakraborty , Debarati Das , Elazar Goldenberg , Michal Koucky , Michael Saks