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Retrosynthesis -- the process of identifying a set of reactants to synthesize a target molecule -- is of vital importance to material design and drug discovery. Existing machine learning approaches based on language models and graph neural…

Chemical Physics · Physics 2021-12-10 Ruoxi Sun , Hanjun Dai , Li Li , Steven Kearnes , Bo Dai

Reliably predicting the products of chemical reactions presents a fundamental challenge in synthetic chemistry. Existing machine learning approaches typically produce a reaction product by sequentially forming its subparts or intermediate…

Chemical Physics · Physics 2021-06-16 Hangrui Bi , Hengyi Wang , Chence Shi , Connor Coley , Jian Tang , Hongyu Guo

Retrosynthesis analysis is pivotal yet challenging in drug discovery and organic chemistry. Despite the proliferation of computational tools over the past decade, AI-based systems often fall short in generalizing across diverse reaction…

Machine Learning · Computer Science 2024-08-21 Yifei Yang , Runhan Shi , Zuchao Li , Shu Jiang , Bao-Liang Lu , Yang Yang , Hai Zhao

Single-step retrosynthesis aims to predict a set of reactions that lead to the creation of a target molecule, which is a crucial task in molecular discovery. Although a target molecule can often be synthesized with multiple different…

Machine Learning · Computer Science 2025-04-15 Piotr Gaiński , Michał Koziarski , Krzysztof Maziarz , Marwin Segler , Jacek Tabor , Marek Śmieja

Computer-assisted methods have emerged as valuable tools for retrosynthesis analysis. However, quantifying the plausibility of generated retrosynthesis routes remains a challenging task. We introduce Retro-BLEU, a statistical metric adapted…

Machine Learning · Computer Science 2024-04-05 Junren Li , Lei Fang , Jian-Guang Lou

Program synthesis is the generation of a program from a specification. Correct synthesis is difficult, and methods that provide formal guarantees suffer from scalability issues. On the other hand, neural networks are able to generate…

Logic in Computer Science · Computer Science 2020-01-28 Elizabeth Polgreen , Ralph Abboud , Daniel Kroening

While deep learning has achieved significant success in various domains, its application to logic circuit design has been limited due to complex constraints and strict feasibility requirement. However, a recent generative deep neural model,…

Logic in Computer Science · Computer Science 2024-06-10 Xihan Li , Xing Li , Lei Chen , Xing Zhang , Mingxuan Yuan , Jun Wang

Computer-aided synthesis planning (CASP) algorithms have demonstrated expert-level abilities in planning retrosynthetic routes to molecules of low to moderate complexity. However, current search methods assume the sufficiency of reaching…

Artificial Intelligence · Computer Science 2024-11-04 Kevin Yu , Jihye Roh , Ziang Li , Wenhao Gao , Runzhong Wang , Connor W. Coley

We cast retrosynthesis as a machine translation problem by introducing a special Tensor2Tensor, an entire attention-based and fully data-driven model. Given a data set comprising about 50,000 diverse reactions extracted from USPTO patents,…

Chemical Physics · Physics 2019-08-05 Hongliang Duan , Ling Wang , Chengyun Zhang , Jianjun Li

Various template-based and template-free approaches have been proposed for single-step retrosynthesis prediction in recent years. While these approaches demonstrate strong performance from a data-driven metrics standpoint, many model…

Machine Learning · Computer Science 2023-08-15 Kevin Zhang , Vipul Mann , Venkat Venkatasubramanian

There is an intuitive analogy of an organic chemist's understanding of a compound and a language speaker's understanding of a word. Consequently, it is possible to introduce the basic concepts and analyze potential impacts of linguistic…

Machine Learning · Computer Science 2017-11-16 Philippe Schwaller , Theophile Gaudin , David Lanyi , Costas Bekas , Teodoro Laino

The advancement of machine learning and the availability of large-scale reaction datasets have accelerated the development of data-driven models for computer-aided synthesis planning (CASP) in the past decade. Here, we detail the newest…

Neural painting refers to the procedure of producing a series of strokes for a given image and non-photo-realistically recreating it using neural networks. While reinforcement learning (RL) based agents can generate a stroke sequence step…

Computer Vision and Pattern Recognition · Computer Science 2021-08-12 Songhua Liu , Tianwei Lin , Dongliang He , Fu Li , Ruifeng Deng , Xin Li , Errui Ding , Hao Wang

Methods for automatic chemical retrosynthesis have found recent success through the application of models traditionally built for natural language processing, primarily through transformer neural networks. These models have demonstrated…

Machine Learning · Computer Science 2025-06-04 Sean Current , Ziqi Chen , Daniel Adu-Ampratwum , Xia Ning , Srinivasan Parthasarathy

In silico tools are important for generating novel hypotheses and exploring alternatives in de novo metabolic pathway design. However, while many computational frameworks have been proposed for retrobiosynthesis, few successful examples of…

Machine Learning · Computer Science 2026-04-16 Peter Zhiping Zhang , Jeffrey D. Varner

Program synthesis is the task of automatically generating a program consistent with a specification. Recent years have seen proposal of a number of neural approaches for program synthesis, many of which adopt a sequence generation paradigm…

Machine Learning · Computer Science 2018-05-23 Rudy Bunel , Matthew Hausknecht , Jacob Devlin , Rishabh Singh , Pushmeet Kohli

The brain is a highly reconfigurable machine capable of task-specific adaptations. The brain continually rewires itself for a more optimal configuration to solve problems. We propose a novel strategic synthesis algorithm for feedforward…

Artificial Intelligence · Computer Science 2021-04-22 Alastair Finlinson , Sotiris Moschoyiannis

Stochastic process-based molecular graph generators have become the state of the art for template-free single-step retrosynthesis. However, these models are typically trained only on product-reactant pairs, thereby acquiring…

Machine Learning · Computer Science 2026-05-26 Jiahai Huang , Anjie Qiao , Zhen Wang , Defu Lian , Yutong Lu

Recent advance in deep learning has led to the rapid adoption of machine learning-based NLP models in a wide range of applications. Despite the continuous gain in accuracy, backward compatibility is also an important aspect for industrial…

Computation and Language · Computer Science 2022-10-11 Deng Cai , Elman Mansimov , Yi-An Lai , Yixuan Su , Lei Shu , Yi Zhang

Synthesis prediction is a key accelerator for the rapid design of advanced materials. However, determining synthesis variables such as the choice of precursor materials is challenging for inorganic materials because the sequence of…

Materials Science · Physics 2023-06-13 Tanjin He , Haoyan Huo , Christopher J. Bartel , Zheren Wang , Kevin Cruse , Gerbrand Ceder