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Solving partial differential equations with the finite element method leads to large linear systems of equations that must be solved. When these systems have a natural block structure due to multiple field variables, using iterative solvers…

Mathematical Software · Computer Science 2025-09-08 Martin Řehoř , Jack S. Hale

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

The growing complexity of Cyber-Physical Systems (CPS), together with increasingly available parallelism provided by multi-core chips, fosters the parallelization of simulation. Simulation speed-ups are expected from co-simulation and…

Systems and Control · Computer Science 2017-03-03 Abir Ben Khaled-El Feki , Laurent Duval , Cyril Faure , Daniel Simon , Mongi Ben Gaid

This paper presents a lightweight, open-source and high-performance python package for solving peridynamics problems in solid mechanics. The development of this solver is motivated by the need for fast analysis tools to achieve the large…

Software Engineering · Computer Science 2021-09-15 B. Boys , T. J. Dodwell , M. Hobbs , M. Girolami

pPython seeks to provide a parallel capability that provides good speed-up without sacrificing the ease of programming in Python by implementing partitioned global array semantics (PGAS) on top of a simple file-based messaging library…

POCP is a new Matlab package running jointly with GloptiPoly 3 and, optionally, YALMIP. It is aimed at nonlinear optimal control problems for which all the problem data are polynomial, and provides an approximation of the optimal value as…

Optimization and Control · Mathematics 2008-09-29 Didier Henrion , Jean-Bernard Lasserre , Carlo Savorgnan

Numerical homotopy continuation methods for three classes of polynomial systems are presented. For a generic instance of the class, every path leads to a solution and the homotopy is optimal. The counting of the roots mirrors the resolution…

Numerical Analysis · Mathematics 2025-10-20 Jan Verschelde

FlowPy is a numerical toolbox for the solution of partial differential equations encountered in Functional Renormalization Group equations. This toolbox compiles flow equations to fast machine code and is able to handle coupled systems of…

Computational Physics · Physics 2015-06-04 Thomas Fischbacher , Franziska Synatschke-Czerwonka

This paper presents FauxPy, a fault localization tool for Python programs. FauxPy supports seven well-known fault localization techniques in four families: spectrum-based, mutation-based, predicate switching, and stack trace fault…

Software Engineering · Computer Science 2024-04-30 Mohammad Rezaalipour , Carlo A. Furia

Direct Numerical Simulations (DNS) of the Navier Stokes equations is a valuable research tool in fluid dynamics, but there are very few publicly available codes and, due to heavy number crunching, codes are usually written in low-level…

Mathematical Software · Computer Science 2016-07-05 Mikael Mortensen

In resent years, the software ecosystem for numerical simulation still remains fragmented, with different algorithms and discretization methods often implemented in isolation, each with distinct data structures and programming conventions.…

Numerical Analysis · Mathematics 2026-03-10 Yangyang Zheng , Huayi Wei , Yunqing Huang , Chunyu Chen , Tian Tian , Hanbin Liu , Wenbin Wang , Liang He

The manuscript addresses the problem of finding all solutions of power flow equations or other similar nonlinear system of algebraic equations. This problem arises naturally in a number of power systems contexts, most importantly in the…

Chaotic Dynamics · Physics 2014-08-13 Dhagash Mehta , Hung Nguyen , Konstantin Turitsyn

SfePy (Simple Finite Elements in Python) is a framework for solving various kinds of problems (mechanics, physics, biology, ...) described by partial differential equations in two or three space dimensions by the finite element method. The…

Computational Engineering, Finance, and Science · Computer Science 2014-04-30 Robert Cimrman

PySEMTools is a Python-based library for post-processing simulation data produced with high-order hexahedral elements in the context of the spectral element method in computational fluid dynamics. It aims to minimize intermediate steps…

Computational Physics · Physics 2025-04-18 Adalberto Perez , Siavash Toosi , Tim Felle Olsen , Stefano Markidis , Philipp Schlatter

Fourier transforms are an often necessary component in many computational tasks, and can be computed efficiently through the fast Fourier transform (FFT) algorithm. However, many applications involve an underlying continuous signal, and a…

Mathematical Software · Computer Science 2022-09-27 Eric Bezzam , Sepand Kashani , Paul Hurley , Martin Vetterli , Matthieu Simeoni

In this chapter, we describe the Parallel Sparse Computation Toolkit (PSCToolkit), a suite of libraries for solving large-scale linear algebra problems in an HPC environment. In particular, we focus on the tools provided for the solution of…

Numerical Analysis · Mathematics 2025-01-09 Pasqua D'Ambra , Fabio Durastante , Salvatore Filippone

This work aims to introduce the framework of polynomial optimization theory to solve fractional polynomial problems (FPPs). Unlike other widely used optimization frameworks, the proposed one applies to a larger class of FPPs, not…

Information Theory · Computer Science 2018-10-17 Andrea Pizzo , Alessio Zappone , Luca Sanguinetti

This article introduces a software package release for geometrically reasoning about the \textit{safety} desiderata of (complex) dynamical systems via level set methods. In emphasis, safety is analyzed with Hamilton-Jacobi equations. In…

Mathematical Software · Computer Science 2025-07-17 Lekan Molu

The stationary points (SPs) of a potential energy landscape play a crucial role in understanding many of the physical or chemical properties of a given system. Unless they are found analytically, there is, however, no efficient method to…

Statistical Mechanics · Physics 2011-12-19 Dhagash Mehta

A special homotopy continuation method, as a combination of the polyhedral homotopy and the linear product homotopy, is proposed for computing all the isolated solutions to a special class of polynomial systems. The root number bound of…

Symbolic Computation · Computer Science 2017-04-27 Yu Wang , Wenyuan Wu , Bican Xia