Related papers: Extending de Bruijn sequences to larger alphabets
Although there are very algorithms for embedding graphs on unbounded grids, only few results on embedding or drawing graphs on restricted grids has been published. In this work, we consider the problem of embedding paths and cycles on grid…
A Barker sequence is a binary sequence for which all nontrivial aperiodic autocorrelations are at most 1 in magnitude. An old conjecture due to Turyn asserts that there is no Barker sequence of length greater than 13. In 1961, Turyn and…
In this short note, we first associate a new simple undirected graph with a given word over an ordered alphabet of $n$-letters. We will call it the Lyndon graph of that word. Then, we introduce the concept of the Lyndon-word representable…
Given a graph, we associate each edge with the transposition which exchanges the endvertices. Fixing a linear order on the edge set, we obtain a permutation of the vertices. D\'enes proved that the permutation is a full cyclic permutation…
We initiate the study of computational problems on $k$-mers (strings of length $k$) in labeled graphs. As a starting point, we consider the problem of counting the number of distinct $k$-mers found on the walks of a graph. We establish that…
A directed acyclic graph G = (V, E) is pseudo-transitive with respect to a given subset of edges E1, if for any edge ab in E1 and any edge bc in E, we have ac in E. We give algorithms for computing longest chains and demonstrate geometric…
Given a graph $G(V, E)$ and a positive integer $k$ ($k \geq 1$), a simple path on $k$ vertices is a sequence of $k$ vertices in which no vertex appears more than once and each consecutive pair of vertices in the sequence are connected by an…
Negative avoiding sequences of span $n$ are periodic sequences of elements from $\mathbb{Z}_k$ for some $k$ with the property that no $n$-tuple occurs more than once in a period and if an $n$-tuple does occur then its negative does not.…
The celebrated Thue-Morse sequence, or the Prouhet-Thue-Morse sequence (A010060 in the OEIS), has a number of interesting properties and is a rich source to many (counter)examples. We introduce two different square-free sequences on three…
We introduce a new class of problems lying halfway between questions about graph capacity and intersection. We say that two binary sequences x and y of the same length have a skewincidence if there is a coordinate i for which x_i=y_{i+1}=1…
If the edges of the complete graph $K_n$ are totally ordered, a simple path whose edges are in ascending order is called increasing. The worst-case length of the longest increasing path has remained an open problem for several decades, with…
Frequency of letters in a symbolic sequence ${\bf u}$ over a finite alphabet is one of the basic characteristics of ${\bf u}$. The notion of $k$-balancedness captures the property that the number of any letter occurring in two arbitrary…
An alternating colouring function is defined on strings over the alphabet $\{0, 1\}$. It divides the strings in colourable and non-colourable ones. The points in the subshift of finite type defined by forbidding all non-colourable strings…
We introduce the notion of de Bruijn entropy of an Eulerian quiver and show how the corresponding relative entropy can be applied to practical string similarity problems. This approach explicitly links the combinatorial and…
In an $n \times n$ array filled with symbols, a transversal is a collection of entries with distinct rows, columns and symbols. In this note we show that if no symbol appears more than $\beta n$ times, the array contains a transversal of…
Given a tree T on v vertices and an integer k exceeding one. One can define the k-expansion T^k as a k-uniform linear hypergraph by enlarging each edge with a new, distinct set of (k-2) vertices. Then T^k has v+ (v-1)(k-2) vertices. The aim…
Over the past decade, a number of quantum processes have been proposed which are logically consistent, yet feature a cyclic causal structure. However, there is no general formal method to construct a process with an exotic causal structure…
An orientable sequence of order $n$ is a cyclic binary sequence such that each length-$n$ substring appears at most once \emph{in either direction}. Maximal length orientable sequences are known only for $n\leq 7$, and a trivial upper bound…
Motivations Short-read accuracy is important for downstream analyses such as genome assembly and hybrid long-read correction. Despite much work on short-read correction, present-day correctors either do not scale well on large data sets or…
A k-digraph is an orientation of a multi-graph that is without loops and contains at most k edges between any pair of distinct vertices. We obtain necessary and sufficient conditions for a sequence of non-negative integers in non-decreasing…