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Graph Transformers have recently attracted attention for molecular property prediction by combining the inductive biases of graph neural networks (GNNs) with the global receptive field of Transformers. However, many existing hybrid…

Machine Learning · Computer Science 2026-04-09 Yi Yang , Ovidiu Daescu

Graph Neural Networks (GNNs), which generalize the deep neural networks to graph-structured data, have achieved great success in modeling graphs. However, as an extension of deep learning for graphs, GNNs lack explainability, which largely…

Machine Learning · Computer Science 2021-08-30 Enyan Dai , Suhang Wang

Graph neural networks (GNNs) have received remarkable success in link prediction (GNNLP) tasks. Existing efforts first predefine the subgraph for the whole dataset and then apply GNNs to encode edge representations by leveraging the…

Information Retrieval · Computer Science 2022-12-26 Qiaoyu Tan , Xin Zhang , Ninghao Liu , Daochen Zha , Li Li , Rui Chen , Soo-Hyun Choi , Xia Hu

Graph condensation aims to reduce the size of a large-scale graph dataset by synthesizing a compact counterpart without sacrificing the performance of Graph Neural Networks (GNNs) trained on it, which has shed light on reducing the…

Machine Learning · Computer Science 2024-06-19 Yuchen Zhang , Tianle Zhang , Kai Wang , Ziyao Guo , Yuxuan Liang , Xavier Bresson , Wei Jin , Yang You

Currently, Deep Learning (DL) components within a Case-Based Reasoning (CBR) application often lack the comprehensive integration of available domain knowledge. The trend within machine learning towards so-called Informed machine learning…

Artificial Intelligence · Computer Science 2021-07-01 Maximilian Hoffmann , Ralph Bergmann

Self-supervised learning provides a promising path towards eliminating the need for costly label information in representation learning on graphs. However, to achieve state-of-the-art performance, methods often need large numbers of…

Matching, a task to optimally assign limited resources under constraints, is a fundamental technology for society. The task potentially has various objectives, conditions, and constraints; however, the efficient neural network architecture…

Machine Learning · Computer Science 2023-10-20 Shusaku Sone , Jiaxin Ma , Atsushi Hashimoto , Naoya Chiba , Yoshitaka Ushiku

While Graph Neural Network (GNN) has shown superiority in learning node representations of homogeneous graphs, leveraging GNN on heterogeneous graphs remains a challenging problem. The dominating reason is that GNN learns node…

Social and Information Networks · Computer Science 2020-09-22 Ziyue Qiao , Pengyang Wang , Yanjie Fu , Yi Du , Pengfei Wang , Yuanchun Zhou

Most existing graph neural networks (GNNs) learn node embeddings using the framework of message passing and aggregation. Such GNNs are incapable of learning relative positions between graph nodes within a graph. To empower GNNs with the…

Machine Learning · Computer Science 2024-11-05 Zhenyue Qin , Yiqun Zhang Saeed Anwar , Dongwoo Kim , Yang Liu , Pan Ji , Tom Gedeon

Graph Neural Networks (GNNs) have gained popularity in various learning tasks, with successful applications in fields like molecular biology, transportation systems, and electrical grids. These fields naturally use graph data, benefiting…

Machine Learning · Computer Science 2024-09-23 Caio F. Deberaldini Netto , Zhiyang Wang , Luana Ruiz

Self-supervised learning has gradually emerged as a powerful technique for graph representation learning. However, transferable, generalizable, and robust representation learning on graph data still remains a challenge for pre-training…

Machine Learning · Computer Science 2021-12-13 Pengyong Li , Jun Wang , Ziliang Li , Yixuan Qiao , Xianggen Liu , Fei Ma , Peng Gao , Seng Song , Guotong Xie

Graph Convolutional Networks (GCNs) achieve an impressive performance due to the remarkable representation ability in learning the graph information. However, GCNs, when implemented on a deep network, require expensive computation power,…

Machine Learning · Computer Science 2022-08-03 Zulun Zhu , Jiaying Peng , Jintang Li , Liang Chen , Qi Yu , Siqiang Luo

Graph Neural Networks (GNNs) have been widely used to learn node representations and with outstanding performance on various tasks such as node classification. However, noise, which inevitably exists in real-world graph data, would…

Machine Learning · Computer Science 2022-06-06 Yancheng Wang , Yingzhen Yang

Graph matching can be formalized as a combinatorial optimization problem, where there are corresponding relationships between pairs of nodes that can be represented as edges. This problem becomes challenging when there are potential…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Dongdong Chen , Yuxing Dai , Lichi Zhang , Zhihong Zhang

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

Machine Learning · Computer Science 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

A main challenge in mining network-based data is finding effective ways to represent or encode graph structures so that it can be efficiently exploited by machine learning algorithms. Several methods have focused in network representation…

Social and Information Networks · Computer Science 2019-03-18 Leonardo Gutiérrez-Gómez , Jean-Charles Delvenne

We present a novel end-to-end framework that generates highly compact (typically 6-15 dimensions), discrete (int4 type), and interpretable node representations, termed node identifiers (node IDs), to tackle inference challenges on…

Machine Learning · Computer Science 2024-10-21 Yuankai Luo , Hongkang Li , Qijiong Liu , Lei Shi , Xiao-Ming Wu

Modern neuroimaging techniques, such as diffusion tensor imaging (DTI) and functional magnetic resonance imaging (fMRI), enable us to model the human brain as a brain network or connectome. Capturing brain networks' structural information…

Entity alignment is a viable means for integrating heterogeneous knowledge among different knowledge graphs (KGs). Recent developments in the field often take an embedding-based approach to model the structural information of KGs so that…

Computation and Language · Computer Science 2019-09-23 Yuting Wu , Xiao Liu , Yansong Feng , Zheng Wang , Dongyan Zhao

This paper addresses the limitations of multi-node perception and delayed scheduling response in distributed systems by proposing a GNN-based multi-node collaborative perception mechanism. The system is modeled as a graph structure.…

Machine Learning · Computer Science 2025-05-23 Wenxuan Zhu , Qiyuan Wu , Tengda Tang , Renzi Meng , Sheng Chai , Xuehui Quan