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Compendium Manager is a command-line tool written in Python to automate the provisioning, launch, and evaluation of bioinformatics pipelines. Although workflow management tools such as Snakemake and Nextflow enable users to automate the…

Genomics · Quantitative Biology 2025-05-19 Richard J. Abdill , Ran Blekhman

LLMs' code generation capabilities have yielded substantial improvements in the effectiveness of programming tasks. However, LLM-generated code still suffers from compilation and runtime errors. Existing offline preference optimization…

Software Engineering · Computer Science 2026-01-09 Jianqing Zhang , Wei Xia , Hande Dong , Qiang Lin , Jian Cao

We have developed PyTIE (Python Topological Indices Expressions) which is defined as the collections of Python packages such as PyTIE D, PyTIE DS, PyTIE SMS DE, and PyTIE SMS DSE, which are open-source software packages and cross-platform…

Chemical Physics · Physics 2025-11-03 Sahaya Vijay Jeyaraj , Roy S , Govardhan S , Tony Augustine , Jyothish K

This is the study that presents an AI-Python-based chatbot that helps students to learn programming by demonstrating solutions to such problems as debugging errors, solving syntax problems or converting abstract theoretical concepts to…

Software Engineering · Computer Science 2025-09-26 Sayed Mahbub Hasan Amiri , Md Mainul Islam

To take full advantage of a specific hardware target, performance engineers need to gain control on compilers in order to leverage their domain knowledge about the program and hardware. Yet, modern compilers are poorly controlled, usually…

Programming Languages · Computer Science 2024-09-10 Martin Paul Lücke , Oleksandr Zinenko , William S. Moses , Michel Steuwer , Albert Cohen

Pre-trained code language models have achieved promising performance in code generation and improved the programming efficiency of human developers. However, their self-refinement capability is typically overlooked by the existing…

Software Engineering · Computer Science 2024-03-28 Yangruibo Ding , Marcus J. Min , Gail Kaiser , Baishakhi Ray

Understanding code is challenging, especially when working in new and complex development environments. Code comments and documentation can help, but are typically scarce or hard to navigate. Large language models (LLMs) are revolutionizing…

Software Engineering · Computer Science 2024-01-18 Daye Nam , Andrew Macvean , Vincent Hellendoorn , Bogdan Vasilescu , Brad Myers

Parsing (also called syntax analysis) techniques cover a substantial portion of any undergraduate Compiler Design course. We present ParseIT, a tool to help students understand the parsing techniques through question-answering. ParseIT…

Programming Languages · Computer Science 2017-02-03 Amey Karkare , Nimisha Agarwal

Programmable packet-processing devices such as programmable switches and network interface cards are becoming mainstream. These devices are configured in a domain-specific language such as P4, using a compiler to translate packet-processing…

Networking and Internet Architecture · Computer Science 2020-12-09 Fabian Ruffy , Tao Wang , Anirudh Sivaraman

Software engineering is knowledge-intensive and requires software developers to continually search for knowledge, often on community question answering platforms such as Stack Overflow. Such information sharing platforms do not exist in…

Software Engineering · Computer Science 2020-03-17 Sebastian Baltes , Christoph Treude , Martin P. Robillard

Generative AI is changing the way that many disciplines are taught, including computer science. Researchers have shown that generative AI tools are capable of solving programming problems, writing extensive blocks of code, and explaining…

Human-Computer Interaction · Computer Science 2024-02-14 Bailey Kimmel , Austin Geisert , Lily Yaro , Brendan Gipson , Taylor Hotchkiss , Sidney Osae-Asante , Hunter Vaught , Grant Wininger , Chase Yamaguchi

Reading, understanding and explaining code have traditionally been important skills for novices learning programming. As large language models (LLMs) become prevalent, these foundational skills are more important than ever given the…

Human-Computer Interaction · Computer Science 2024-03-12 Paul Denny , David H. Smith , Max Fowler , James Prather , Brett A. Becker , Juho Leinonen

While developers increasingly adopt tools powered by large language models (LLMs) in day-to-day workflows, these tools still require explicit user invocation. To seamlessly integrate LLM capabilities to a developer's workflow, we introduce…

Human-Computer Interaction · Computer Science 2025-03-20 Sebastian Zhao , Alan Zhu , Hussein Mozannar , David Sontag , Ameet Talwalkar , Valerie Chen

Traditionally, parsing has been a laborious and error-prone component of compiler development, and most parsers for full industrial programming languages are still written by hand. The author [Zim22] shows that automatic parser generation…

Programming Languages · Computer Science 2022-09-20 Joe Zimmerman

Developers often encounter unfamiliar code during software maintenance which consumes a significant amount of time for comprehension, especially for novice programmers. Automated techniques that analyze a source code and present key…

Software Engineering · Computer Science 2021-07-07 Ashutosh Rajput , Nakshatra Gupta , Sridhar Chimalakonda

Python is known to be used by beginners to professional programmers. Python provides functionality to its community of users through PyPI libraries, which allows developers to reuse functionalities to an application. However, it is unknown…

New information technologies provide a lot of prospects for performance improvement. One of them is "Dynamic Source Code Generation and Compilation". This article shows how this way provides high performance for engineering problems.

Performance · Computer Science 2008-08-25 Petr R. Ivankov

As software projects progress, quality of code assumes paramount importance as it affects reliability, maintainability and security of software. For this reason, static analysis tools are used in developer workflows to flag code quality…

Utilizing code snippets on Stack Overflow (SO) is a common practice among developers for problem-solving. Although SO code snippets serve as valuable resources, it is important to acknowledge their imperfections, reusing problematic code…

Software Engineering · Computer Science 2024-08-20 Yubo Mai , Zhipeng Gao , Haoye Wang , Tingting Bi , Xing Hu , Xin Xia , Jianling Sun

Manually editing pasted code is a long-standing developer pain point. In internal software development at Google, we observe that code is pasted 4 times more often than it is manually typed. These paste actions frequently require follow-up…

Software Engineering · Computer Science 2026-04-14 Vincent Nguyen , Guilherme Herzog , José Cambronero , Marcus Revaj , Aditya Kini , Alexander Frömmgen , Maxim Tabachnyk