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All-pairs compute problems apply a user-defined function to each combination of two items of a given data set. Although these problems present an abundance of parallelism, data reuse must be exploited to achieve good performance. Several…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-11 Stijn Heldens , Pieter Hijma , Ben van Werkhoven , Jason Maassen , Henri Bal , Rob van Nieuwpoort

We present families of space-time finite element methods (STFEMs) for a coupled hyperbolic-parabolic system of poro- or thermoelasticity. Well-posedness of the discrete problems is proved. Higher order approximations inheriting most of the…

Numerical Analysis · Mathematics 2023-03-14 Mathias Anselmann , Markus Bause , Nils Margenberg , Pavel Shamko

Large-scale parallel numerical simulations are essential for a wide range of engineering problems that involve complex, coupled physical processes interacting across a broad range of spatial and temporal scales. The data structures involved…

Mathematical Software · Computer Science 2018-10-11 Fande Kong , Roy H. Stogner , Derek R. Gaston , John W. Peterson , Cody J. Permann , Andrew E. Slaughter , Richard C. Martineau

We propose a novel machine learning framework for solving optimization problems governed by large-scale partial differential equations (PDEs) with high-dimensional random parameters. Such optimization under uncertainty (OUU) problems may be…

Optimization and Control · Mathematics 2023-06-01 Dingcheng Luo , Thomas O'Leary-Roseberry , Peng Chen , Omar Ghattas

Large-scale numerical simulations often come at the expense of daunting computations. High-Performance Computing has enhanced the process, but adapting legacy codes to leverage parallel GPU computations remains challenging. Meanwhile,…

Diffusion models have achieved remarkable success in generative AI, yet their computational efficiency remains a significant challenge, particularly for Diffusion Transformers (DiTs) requiring intensive full-attention computation. While…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Yuyang Chen , Linqian Zeng , Yijin ZHou , Hengjie Li , Jidong Zhai

In this paper, we propose a hybrid framework to solve large-scale permutation-based combinatorial problems effectively using a high-performance quadratic unconstrained binary optimization (QUBO) solver. To do so, transformations are…

Optimization and Control · Mathematics 2021-07-07 Siong Thye Goh , Sabrish Gopalakrishnan , Jianyuan Bo , Hoong Chuin Lau

The rapid development of generative models for single-cell gene expression data has created an urgent need for standardised evaluation frameworks. Current evaluation practices suffer from inconsistent metric implementations, incomparable…

Genomics · Quantitative Biology 2026-03-13 Andrea Rubbi , Andrea Giuseppe Di Francesco , Mohammad Lotfollahi , Pietro Liò

In this work, we consider fracture propagation in nearly incompressible and (fully) incompressible materials using a phase-field formulation. We use a mixed form of the elasticity equation to overcome volume locking effects and develop a…

Numerical Analysis · Mathematics 2022-02-10 Timo Heister , Katrin Mang , Thomas Wick

Geometric data pruning methods, while practical for leveraging pretrained models, are fundamentally unstable. Their reliance on extrinsic geometry renders them highly sensitive to latent space perturbations, causing performance to degrade…

Machine Learning · Computer Science 2026-05-11 Arjun Roy , Prajna G. Malettira , Manish Nagaraj , Kaushik Roy

Frontier models increasingly adopt Mixture-of-Experts (MoE) architectures to achieve large-model performance at reduced cost. However, training MoE models on HPC platforms is hindered by large memory footprints, frequent large-scale…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-07 Sajal Dash , Feiyi Wang

This paper introduces PDEformer-1, a versatile neural solver capable of simultaneously addressing various partial differential equations (PDEs). With the PDE represented as a computational graph, we facilitate the seamless integration of…

Numerical Analysis · Mathematics 2025-01-28 Zhanhong Ye , Xiang Huang , Leheng Chen , Zining Liu , Bingyang Wu , Hongsheng Liu , Zidong Wang , Bin Dong

Many HPC applications can be expressed as mixed-mode computations, in which each node of a computational DAG is itself a parallel computation that can be molded at runtime to allocate different amounts of processing resources. At the same…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-10 Agnes Rohlin , Henrik Fahlgren , Miquel Pericas

Multigrid solvers are among the most efficient methods for solving the Poisson equation, which is ubiquitous in computational physics. For example, in the context of incompressible flows, it is typically the costliest operation. The present…

Numerical Analysis · Mathematics 2025-12-10 Gilles Poncelet , Jonathan Lambrechts , Thomas Gillis , Philippe Chatelain

The increasing demands for computing performance have been a reality regardless of the requirements for smaller and more energy efficient devices. Throughout the years, the strategy adopted by industry was to increase the robustness of a…

Software Engineering · Computer Science 2019-05-07 Hugo Andrade , Ivica Crnkovic

This article presents an automatic approach to quickly derive a good solution for hardware resource partition and task granularity for task-based parallel applications on heterogeneous many-core architectures. Our approach employs a…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-10 Peng Zhang , Jianbin Fang , Canqun Yang , Chun Huang , Tao Tang , Zheng Wang

With the increasing data volume, there is a trend of using large-scale pre-trained models to store the knowledge into an enormous number of model parameters. The training of these models is composed of lots of dense algebras, requiring a…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-11 Xiaonan Nie , Xupeng Miao , Zilong Wang , Zichao Yang , Jilong Xue , Lingxiao Ma , Gang Cao , Bin Cui

Current climate change has posed a grand challenge in the field of numerical modeling due to its complex, multiscale dynamics. In hydrological modeling, the increasing demand for high-resolution, real-time simulations has led to the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-04 Johansell Villalobos , Daniel Caviedes-Voullième , Silvio Rizzi , Esteban Meneses

Hadoop is a popular MapReduce framework for developing parallel applications in distributed environments. Several advantages of MapReduce such as programming ease and ability to use commodity hardware make the applicability of soft…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Güngör Yildirim , İbrahim R Hallac , Galip Aydin , Yetkin Tatar

We consider the problem of optimizing hybrid structures (mixture of discrete and continuous input variables) via expensive black-box function evaluations. This problem arises in many real-world applications. For example, in materials design…

Machine Learning · Computer Science 2021-12-03 Aryan Deshwal , Syrine Belakaria , Janardhan Rao Doppa