Related papers: Cooperativity, Absolute Interaction, and Algebraic…
Equilibrium aspects of molecular recognition of rigid biomolecules are investigated using coarse-grained lattice models. The analysis is carried out in two stages. First an ensemble of probe molecules is designed with respect to the target…
The Hermitian effective interaction can be well-approximated by (R+R^dagger)/2 if the eigenvalues of omega^dagger omega are small or state-independent(degenerate), where R is the standard non-Hermitian effective interaction and omega maps…
The set covering problem (SCP) is one of the representative combinatorial optimization problems, having many practical applications. This paper investigates the development of an algorithm to solve SCP by employing chemical reaction…
We introduce semiframes (an algebraic structure) and investigate their duality with semitopologies (a topological one). Both semitopologies and semiframes are relatively recent developments, arising from a novel application of topological…
We present a new reciprocal space analytical method to cutoff the long range interactions in supercell calculations for systems that are infinite and periodic in 1 or 2 dimensions, extending previous works for finite systems. The proposed…
Graph transformation systems have the potential to be realistic models of chemistry, provided a comprehensive collection of reaction rules can be extracted from the body of chemical knowledge. A first key step for rule learning is the…
An exponential interaction is constructed so that one-dimensional atoms and chains of atoms mimic the general behavior of their three-dimensional counterparts. Relative to the more commonly used soft-Coulomb interaction, the exponential…
In this paper, we present several new linearizations of a quadratic binary optimization problem (QBOP), primarily using the method of aggregations. Although aggregations were studied in the past in the context of solving system of…
Clustering with submodular functions has been of interest over the last few years. Symmetric submodular functions are of particular interest as minimizing them is significantly more efficient and they include many commonly used functions in…
We construct a nuclear interaction in chiral effective field theory with explicit inclusion of the $\Delta$-isobar $\Delta(1232)$ degree of freedom at all orders up to next-to-next-to-leading order (NNLO). We use pion-nucleon ($\pi N$)…
This article presents the first mixed-integer linear programming (MILP)-based iterative algorithm to solve factorable mixed-integer nonlinear programs (MINLPs) with bounded, differentiable periodic functions to global optimality with an…
In partial action theory, a pertinent question is whenever given a partial (co)action of a Hopf algebra A on an algebra R, it is possible to construct an enveloping (co)action. The authors Alves and Batista, in [2],have shown that this is…
In this report, we introduce observation algebras, constructed by considering the downclosed subsets of a coherence space ordered by reverse inclusion. These may be interpreted as specifications of sets of events via some predicates with…
This paper investigates Rota-Baxter associative algebras of of arbitrary weights, that is, associative algebras endowed with Rota-Baxter operators of arbitrary weights from an operadic viewpoint. Denote by $\RB$ the operad of Rota-Baxter…
Tiering is an essential technique for building large-scale information retrieval systems. While the selection of documents for high priority tiers critically impacts the efficiency of tiering, past work focuses on optimizing it with respect…
Following the success of the so-called algebraic approach to the study of decision constraint satisfaction problems (CSPs), exact optimization of valued CSPs, and most recently promise CSPs, we propose an algebraic framework for valued…
Coalgebraic bisimilarity minimization generalizes classical automaton minimization to a large class of automata whose transition structure is specified by a functor, subsuming strong, weighted, and probabilistic bisimilarity. This offers…
In this work, we address a task allocation problem for human multi-robot settings. Given a set of tasks to perform, we formulate a general Mixed-Integer Linear Programming (MILP) problem aiming at minimizing the overall execution time while…
We study the various term operations on the set of skew primitive elements of Hopf algebras, generated by skew primitive semi-invariants of an Abelian group of grouplike elements. All 1-linear binary operations are described and trilinear…
One of the fundamental challenges of governance is deciding when and how to intervene in multi-agent systems in order to impact group-wide metrics of success. This is particularly challenging when proposed interventions are novel and…