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We introduce Net2Brain, a graphical and command-line user interface toolbox for comparing the representational spaces of artificial deep neural networks (DNNs) and human brain recordings. While different toolboxes facilitate only single…

Computer Vision and Pattern Recognition · Computer Science 2025-09-08 Domenic Bersch , Kshitij Dwivedi , Martina Vilas , Radoslaw M. Cichy , Gemma Roig

Constructing structural brain networks using T1-weighted magnetic resonance imaging (T1-MRI) presents a significant challenge due to the lack of direct regional connectivity information. Current methods with T1-MRI rely on predefined…

Computer Vision and Pattern Recognition · Computer Science 2023-05-18 Yilin Leng , Wenju Cui , Chen Bai , Zheng Yanyan , Jian Zheng

We analyze functional magnetic resonance imaging (fMRI) data from the Human Connectome Project (HCP) to match brain activities during a range of cognitive tasks. Our findings demonstrate that even basic linear machine learning models can…

Neurons and Cognition · Quantitative Biology 2025-10-08 Valeriya Kirova , Dzerassa Kadieva , Daniil Vlasenko , Isak B. Blank , Fedor Ratnikov

The brain is likely the most complex organ, given the variety of functions it controls, the number of cells it comprises, and their corresponding diversity. Studying and identifying neurons, the brain's primary building blocks, is a crucial…

Machine Learning · Computer Science 2023-06-02 Ofek Ophir , Orit Shefi , Ofir Lindenbaum

With the increasing adoption of machine learning tools like neural networks across several domains, interesting connections and comparisons to concepts from other domains are coming to light. In this work, we focus on the class of Tensor…

Machine Learning · Computer Science 2020-04-22 Raghavendra Selvan , Erik B Dam

We tackle classification based on brain connectivity derived from diffusion magnetic resonance images. We propose a machine-learning model inspired by graph convolutional networks (GCNs), which takes a brain connectivity input graph and…

Neurons and Cognition · Quantitative Biology 2023-09-21 Anees Kazi , Jocelyn Mora , Bruce Fischl , Adrian V. Dalca , Iman Aganj

Deep neural network (DNN) models have demonstrated impressive performance in various domains, yet their application in cognitive neuroscience is limited due to their lack of interpretability. In this study we employ two structurally…

Signal Processing · Electrical Eng. & Systems 2024-09-04 Murat Kucukosmanoglu , Javier O. Garcia , Justin Brooks , Kanika Bansal

The layered structure of deep neural networks hinders the use of numerous analysis tools and thus the development of its interpretability. Inspired by the success of functional brain networks, we propose a novel framework for…

Machine Learning · Computer Science 2022-05-25 Ben Zhang , Zhetong Dong , Junsong Zhang , Hongwei Lin

This study investigated age-related changes in functional connectivity using resting-state fMRI and explored the efficacy of traditional deep learning for classifying brain developmental stages (BDS). Functional connectivity was assessed…

Neurons and Cognition · Quantitative Biology 2025-03-28 Prerna Singh , Kuldeep Singh Yadav , Lalan Kumar , Tapan Kumar Gandhi

This paper details the implementation of an algorithm for automatically generating a high-level knowledge network to perform commonsense reasoning, specifically with the application of robotic task repair. The network is represented using a…

Artificial Intelligence · Computer Science 2016-07-05 Haley Garrison , Sonia Chernova

Noninvasive medical neuroimaging has yielded many discoveries about the brain connectivity. Several substantial techniques mapping morphological, structural and functional brain connectivities were developed to create a comprehensive road…

Machine Learning · Computer Science 2022-09-30 Alaa Bessadok , Mohamed Ali Mahjoub , Islem Rekik

We look at the internal structure of neural networks which is usually treated as a black box. The easiest and the most comprehensible thing to do is to look at a binary classification and try to understand the approach a neural network…

Machine Learning · Computer Science 2023-01-25 Tushar Pandey

Sustainable research on computational models of neuronal networks requires published models to be understandable, reproducible, and extendable. Missing details or ambiguities about mathematical concepts and assumptions, algorithmic…

Visually comparing brain networks, or connectomes, is an essential task in the field of neuroscience. Especially relevant to the field of clinical neuroscience, group studies that examine differences between populations or changes over time…

Neurons and Cognition · Quantitative Biology 2017-07-03 Johnson J. G. Keiriz , Liang Zhan , Morris Chukhman , Olu Ajilore , Alex D. Leow , Angus G. Forbes

Decoding brain functional states underlying different cognitive processes using multivariate pattern recognition techniques has attracted increasing interests in brain imaging studies. Promising performance has been achieved using brain…

Computer Vision and Pattern Recognition · Computer Science 2018-09-18 Hongming Li , Yong Fan

The current deep neural network algorithm still stays in the end-to-end training supervision method like Image-Label pairs, which makes traditional algorithm is difficult to explain the reason for the results, and the prediction logic is…

Computer Vision and Pattern Recognition · Computer Science 2024-01-10 Yishuang Tian , Ning Wang , Liang Zhang

The segregation of brain fiber tractography data into distinct and anatomically meaningful clusters can help to comprehend the complex brain structure and early investigation and management of various neural disorders. We propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2017-10-17 Tushar Gupta , Shreyas Malakarjun Patil , Mukkaram Tailor , Daksh Thapar , Aditya Nigam

Deep learning has shown promising results in medical image analysis, however, the lack of very large annotated datasets confines its full potential. Although transfer learning with ImageNet pre-trained classification models can alleviate…

Computer Vision and Pattern Recognition · Computer Science 2018-08-16 Ken C. L. Wong , Tanveer Syeda-Mahmood , Mehdi Moradi

Brain disorders are an umbrella term for a group of neurological and psychiatric conditions that have a major effect on thinking, feeling, and acting. These conditions encompass a wide range of conditions. The illnesses in question pose…

Neurons and Cognition · Quantitative Biology 2025-11-11 Aniruddha Saha , Soujanya Hazra , Sanjay Ghosh

Brain imaging analysis is fundamental in neuroscience, providing valuable insights into brain structure and function. Traditional workflows follow a sequential pipeline-brain extraction, registration, segmentation, parcellation, network…

Image and Video Processing · Electrical Eng. & Systems 2025-02-27 Yao Su , Keqi Han , Mingjie Zeng , Lichao Sun , Liang Zhan , Carl Yang , Lifang He , Xiangnan Kong
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